Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq10 197 2e-45 >seq10 Length=2191866 Score = 197 bits (218), Expect = 2e-45 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 || || || ||| | || ||||| | ||| | | || | |||||||| ||||| | Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 ||||||||||||||||| |||||||| || |||||| | || |||||||| || || Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTTATCATCGCTTTCATCGCTGCTCCG 2092253 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || || || ||||| || || ||||||||||| | ||||| | | |||||||||||| Sbjct 2092252 CCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAAC 2092193 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 |||||| | ||||| ||||||||| |||| ||||| ||||| | || ||||| || || Sbjct 2092192 ATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAATT 2092133 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGG 211836 |||||||| || |||| ||||||||| Sbjct 2092132 TGGGAAGCTGCTTCTCTAGATGAGTGG 2092106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807542571855560