Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq35 114 3e-20
>seq35
Length=1396082
Score = 114 bits (126), Expect = 3e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 364073 AGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCA 364132
|||||||| ||||| ||| || ||| | | ||| ||| | || ||||||||||
Sbjct 1360354 AGTATGAACGCGAGGGCCGGGCACGCAAGGTGGTGCGCGCGCAGCAACTGTGGTTTGCCA 1360295
Query 364133 TCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACC 364192
|| |||| | ||| | ||||| || | || || ||||||||||| || |||||||||
Sbjct 1360294 TCCTGGAGGCTCAGGTGGAGACGGGCAATCCGTACATGTTGTACAAGGACTCGTGCAACA 1360235
Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTA 364252
|| |||||||||||| |||| || || || || ||| || || ||||||||||
Sbjct 1360234 AGAAATCCAACCAGCAGAACCTGGGCACTATCAAGTGTTCCAATCTGTGCACCGAGATTA 1360175
Query 364253 TTGAATACACC 364263
|||| ||||||
Sbjct 1360174 TTGAGTACACC 1360164
Score = 91.5 bits (100), Expect = 4e-13
Identities = 125/172 (73%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864
||||| || |||||||| || || |||||||| || || || || || || |||||||
Sbjct 1360806 AGGTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATCGAGCCC 1360747
Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATT 363923
||||| || | || |||||| | || || || || || ||||| || |||||
Sbjct 1360746 TGGCATGCGGACGTCTTCGAGTTTTTGGATCTGCGCAAGAATCACGGCAAG-GAGGAGGC 1360688
Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975
||| || |||||||||||||| | |||||| || | |||| || ||| ||
Sbjct 1360687 GCGCGCGCGTGATCTGTTCTACGGCCTTTGGATTCCGGACCTGTTCATGGAG 1360636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303332709278282
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |