Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq35 114 3e-20 >seq35 Length=1396082 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 364073 AGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCA 364132 |||||||| ||||| ||| || ||| | | ||| ||| | || |||||||||| Sbjct 1360354 AGTATGAACGCGAGGGCCGGGCACGCAAGGTGGTGCGCGCGCAGCAACTGTGGTTTGCCA 1360295 Query 364133 TCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACC 364192 || |||| | ||| | ||||| || | || || ||||||||||| || ||||||||| Sbjct 1360294 TCCTGGAGGCTCAGGTGGAGACGGGCAATCCGTACATGTTGTACAAGGACTCGTGCAACA 1360235 Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTA 364252 || |||||||||||| |||| || || || || ||| || || |||||||||| Sbjct 1360234 AGAAATCCAACCAGCAGAACCTGGGCACTATCAAGTGTTCCAATCTGTGCACCGAGATTA 1360175 Query 364253 TTGAATACACC 364263 |||| |||||| Sbjct 1360174 TTGAGTACACC 1360164 Score = 91.5 bits (100), Expect = 4e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 ||||| || |||||||| || || |||||||| || || || || || || ||||||| Sbjct 1360806 AGGTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATCGAGCCC 1360747 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATT 363923 ||||| || | || |||||| | || || || || || ||||| || ||||| Sbjct 1360746 TGGCATGCGGACGTCTTCGAGTTTTTGGATCTGCGCAAGAATCACGGCAAG-GAGGAGGC 1360688 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975 ||| || |||||||||||||| | |||||| || | |||| || ||| || Sbjct 1360687 GCGCGCGCGTGATCTGTTCTACGGCCTTTGGATTCCGGACCTGTTCATGGAG 1360636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303332709278282