Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq35 111 1e-19 seq67 87.8 2e-12 >seq35 Length=1396082 Score = 111 bits (122), Expect = 1e-19 Identities = 172/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 145679 ATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTG 145738 ||||||| ||||| |||| ||| ||||| || ||||| || ||||| || |||| || Sbjct 1360177 ATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCTGGTTGGATTTCTTG 1360236 Query 145739 TTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT- 145797 ||||||| ||||||||| | ||||||||| ||| ||||||||||| | ||||| ||| Sbjct 1360237 TTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCTGAGCCTCCAGGATG 1360296 Query 145798 -AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATT 145856 |||| || | |||||| |||||| || | |||||||| ||| || | Sbjct 1360297 GCAAAC--CACAGTTGCTGCGCGCGCACCACCTTGCGTGCCCGGCCCTCGCGTTCATACT 1360354 Query 145857 TCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGG 145916 | |||| || |||||| | | || |||| || | |||| | | || ||||| Sbjct 1360355 GCGTGTACAGGCGCTCAAAGTCTGCTCCCCAGCACTCAGCCAGGTCTTGCGCCTCGTTGG 1360414 Query 145917 GACA 145920 |||| Sbjct 1360415 GACA 1360418 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||| ||||| | || | ||| |||||| ||||||||||| || Sbjct 1305121 GCCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305062 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || | || | ||||||||||||||| || Sbjct 1305061 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305002 Query 131127 GATTCCT 131133 || ||| Sbjct 1305001 AATGCCT 1304995 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| ||||| | || | ||| |||||| ||||||||||| || | Sbjct 1306214 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1306155 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || | || | ||||||||||||||| || Sbjct 1306154 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1306095 Query 131128 ATTCCT 131133 || ||| Sbjct 1306094 ATGCCT 1306089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 145032 TGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGAC 145091 || ||| ||||| || |||| ||| || || || ||||||||| | ||||| || | Sbjct 1358515 TGTTCAGGTCGTGAAGCAAGTGCTGGTTCACAACAGTAAACTCGCCCGATAACACGCGCC 1358574 Query 145092 GCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGG 145151 | | || | ||| || ||| |||| ||||| ||||||| ||||||||||| || | | Sbjct 1358575 GAACGTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGGACG 1358634 Query 145152 TCGTTGCGGTGGGCATGTACGCCACCAA 145179 ||| || ||||||||| || ||||| Sbjct 1358635 TCGAGGCTGTGGGCATGGGGGCAACCAA 1358662 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | || | ||| |||||| ||||||||||| || Sbjct 1305473 GCCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305414 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || | || | ||||||||||||||| || Sbjct 1305413 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305354 Query 131127 GATTCCT 131133 || ||| Sbjct 1305353 AATGCCT 1305347 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | || | ||| |||||| ||||||||||| || Sbjct 1305844 GCCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1305785 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || | || | ||||||||||||||| || Sbjct 1305784 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305725 Query 131127 GATTCCT 131133 || ||| Sbjct 1305724 AATGCCT 1305718 >seq67 Length=753185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||||||| | ||| | || ||||| || |||||||| || | Sbjct 68652 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCC 68711 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| | || | |||||||||||||||||| Sbjct 68712 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGA 68771 Query 131128 ATTCCT 131133 || ||| Sbjct 68772 ATGCCT 68777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||||||| | ||| | || |||||| || |||||||| || | Sbjct 68279 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 68338 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| | || | |||||||||||| || || Sbjct 68339 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGA 68398 Query 131128 ATTCCT 131133 || ||| Sbjct 68399 ATGCCT 68404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005418899840