Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq37 82.4 9e-11 >seq6 Length=2401260 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 15054 AGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCATGATTTTC 15112 || ||||||||||||| ||| || | ||| || |||||||| |||||||| | | | Sbjct 2072210 AGGTTGGCGACAAGTTCGCCTCCCGTCACGGC-CAGAAGGGCACCTGCGGCATTACCTAC 2072268 Query 15113 CCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCC 15172 || ||| ||||||||||| ||||| ||||| ||| ||||| ||| ||||||| Sbjct 2072269 ACCATGGAGGACATGCCCTTCTCCGCGGAGGGCATTGTGCCGGACATCATCGTCAACCCG 2072328 Query 15173 AACTGCATCCCGTCCCGCATGACCAT 15198 || ||| || |||||||||||||| Sbjct 2072329 CACGCCATTCCCTCCCGCATGACCAT 2072354 >seq37 Length=1295102 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 126181 GTGTAAATGTAGCGGGGAGCT-GCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 || |||||||||| | | ||| || | |||||| || |||| || || ||||| ||||| Sbjct 760099 GTATAAATGTAGC-GAGCGCTGGCAGCATCCTTTCCACCCTGCAGGCGTGTGCCGAACTG 760041 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 |||| || | || | | | ||||| ||| |||||||| || || | || || Sbjct 760040 ACCGCTGGGGTGCAGGAGGTTGATGTTGTTACTTCCAACAAAGTCTTGTGCGAGGTTTAC 759981 Query 126300 AATGGT-CTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 |||||| || || || | |||| ||||| || | ||| ||| |||||||| ||||| Sbjct 759980 AATGGTACTGGC-CAAGCTCTGTTCGCCATGGTGGTACGCGGAGTGCTCGGCTACGTACG 759922 Query 126359 CGCTCAGCTGCGCAACCT 126376 || ||| || || |||| Sbjct 759921 CGGACAGTTGAGCCACCT 759904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611382439357600