Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq6 95.1 1e-14
seq37 82.4 9e-11
>seq6
Length=2401260
Score = 95.1 bits (104), Expect = 1e-14
Identities = 110/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 15054 AGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCATGATTTTC 15112
|| ||||||||||||| ||| || | ||| || |||||||| |||||||| | | |
Sbjct 2072210 AGGTTGGCGACAAGTTCGCCTCCCGTCACGGC-CAGAAGGGCACCTGCGGCATTACCTAC 2072268
Query 15113 CCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCC 15172
|| ||| ||||||||||| ||||| ||||| ||| ||||| ||| |||||||
Sbjct 2072269 ACCATGGAGGACATGCCCTTCTCCGCGGAGGGCATTGTGCCGGACATCATCGTCAACCCG 2072328
Query 15173 AACTGCATCCCGTCCCGCATGACCAT 15198
|| ||| || ||||||||||||||
Sbjct 2072329 CACGCCATTCCCTCCCGCATGACCAT 2072354
>seq37
Length=1295102
Score = 82.4 bits (90), Expect = 9e-11
Identities = 140/198 (71%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 126181 GTGTAAATGTAGCGGGGAGCT-GCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239
|| |||||||||| | | ||| || | |||||| || |||| || || ||||| |||||
Sbjct 760099 GTATAAATGTAGC-GAGCGCTGGCAGCATCCTTTCCACCCTGCAGGCGTGTGCCGAACTG 760041
Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299
|||| || | || | | | ||||| ||| |||||||| || || | || ||
Sbjct 760040 ACCGCTGGGGTGCAGGAGGTTGATGTTGTTACTTCCAACAAAGTCTTGTGCGAGGTTTAC 759981
Query 126300 AATGGT-CTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358
|||||| || || || | |||| ||||| || | ||| ||| |||||||| |||||
Sbjct 759980 AATGGTACTGGC-CAAGCTCTGTTCGCCATGGTGGTACGCGGAGTGCTCGGCTACGTACG 759922
Query 126359 CGCTCAGCTGCGCAACCT 126376
|| ||| || || ||||
Sbjct 759921 CGGACAGTTGAGCCACCT 759904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611382439357600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |