Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq10 156 5e-33
seq65 87.8 2e-12
>seq10
Length=2191866
Score = 156 bits (172), Expect = 5e-33
Identities = 197/268 (74%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 166054 TTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTG 166113
|| || || ||| | || || || | ||||| ||||| | |||||||| || | |
Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313
Query 166114 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACC 166172
||||| ||| ||| | | ||||| ||| || || ||| |||||||| | || || ||
Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCATCGCTGCTCC 2092254
Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232
|| || || |||||||| || ||||| || || |||| ||||| | |||||||||||
Sbjct 2092253 GCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAA 2092194
Query 166233 CATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCAT 166292
||||||| | ||||||||||| || | || ||||| || || || || ||||| || ||
Sbjct 2092193 CATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAAT 2092134
Query 166293 CTGGGAAGCAGCATCACTTGATGAATGG 166320
|||||||| || || || ||||| |||
Sbjct 2092133 TTGGGAAGCTGCTTCTCTAGATGAGTGG 2092106
>seq65
Length=794414
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 166751 TGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTC 166808
||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||
Sbjct 544454 TGGCTGCTCATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTC 544511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567223129909600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |