Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq35 114 2e-20
seq8 93.3 8e-14
>seq35
Length=1396082
Score = 114 bits (126), Expect = 2e-20
Identities = 124/162 (77%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758
||| ||||||||||||| | || || ||||| ||||| ||| ||| | || | |
Sbjct 1268832 GAGCGGCTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCGTTTTGCAGC 1268891
Query 42759 ATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817
|| |||||||||||| | | | | | ||||||||| || |||||||| |||||||||||
Sbjct 1268892 ATTTTCTGGCTCAAGAA-ACGCGGCCTGATGCCCGGCCTAACCTTCTCAAACGAACTCAT 1268950
Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859
| | | |||||||||||||| | ||||| |||||||| ||
Sbjct 1268951 CTCCCGAGACGAGGGGCTGCACTGCGACTTCGCCTGCCTGCT 1268992
Score = 104 bits (114), Expect = 4e-17
Identities = 124/166 (75%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067
|| |||||| ||||| || ||||| ||| | | ||| || || | | | | ||| ||
Sbjct 1360636 CTCCATGAACAGGTCCGGAATCCAAAGGCCGTAGAACAGATCACGCGCGCGCGCCTCCTC 1360695
Query 245068 CGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCA 245126
| ||| ||| ||||| | ||| |||||||| || |||||||| | ||||||||||| |
Sbjct 1360696 CTTGCC-GTGATTCTTGCGCAGATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGA 1360754
Query 245127 TGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172
|||||| |||| |||||| |||||| ||| |||||||||||
Sbjct 1360755 TGTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1360800
Score = 86.0 bits (94), Expect = 1e-11
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778
||||||||| | |||||||||||| || || |||||||| |||||||||| ||| |
Sbjct 1360163 TGGTGTACTCAATAATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCT 1360222
Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838
| ||||| || |||||| | ||||||||| | |||| | || || ||||| | ||
Sbjct 1360223 GGTTGGATTTCTTGTTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCT 1360282
Query 244839 GGGCGACGAGGA 244850
| || | ||||
Sbjct 1360283 GAGCCTCCAGGA 1360294
>seq8
Length=2307048
Score = 93.3 bits (102), Expect = 8e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471
||||| || | |||| |||||||| ||| ||||| || || | ||||||||| |
Sbjct 630941 TCAAATACGTGTTGGCATTCTTCGCTGCCAGCGACGGTATCGTGATGGAGAACCTGTCGG 631000
Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531
| |||||||| ||||||||| |||||| ||| ||||||||||||||||| |
Sbjct 631001 CGCGGTTCATGTCGGAGGTGCAGGTGCCTGAGGCCCGCGCATTCTACGGCTTCCAGATTG 631060
Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTAC 42560
|||| || |||||||| ||| |||||
Sbjct 631061 CCATGGAAAACGTGCATAGCGAGATGTAC 631089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944324432895760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |