Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq35 114 2e-20 seq8 93.3 8e-14 >seq35 Length=1396082 Score = 114 bits (126), Expect = 2e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| ||||||||||||| | || || ||||| ||||| ||| ||| | || | | Sbjct 1268832 GAGCGGCTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCGTTTTGCAGC 1268891 Query 42759 ATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 || |||||||||||| | | | | | ||||||||| || |||||||| ||||||||||| Sbjct 1268892 ATTTTCTGGCTCAAGAA-ACGCGGCCTGATGCCCGGCCTAACCTTCTCAAACGAACTCAT 1268950 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 | | | |||||||||||||| | ||||| |||||||| || Sbjct 1268951 CTCCCGAGACGAGGGGCTGCACTGCGACTTCGCCTGCCTGCT 1268992 Score = 104 bits (114), Expect = 4e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||| ||||| || ||||| ||| | | ||| || || | | | | ||| || Sbjct 1360636 CTCCATGAACAGGTCCGGAATCCAAAGGCCGTAGAACAGATCACGCGCGCGCGCCTCCTC 1360695 Query 245068 CGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCA 245126 | ||| ||| ||||| | ||| |||||||| || |||||||| | ||||||||||| | Sbjct 1360696 CTTGCC-GTGATTCTTGCGCAGATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGA 1360754 Query 245127 TGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 |||||| |||| |||||| |||||| ||| ||||||||||| Sbjct 1360755 TGTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1360800 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| | |||||||||||| || || |||||||| |||||||||| ||| | Sbjct 1360163 TGGTGTACTCAATAATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCT 1360222 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 | ||||| || |||||| | ||||||||| | |||| | || || ||||| | || Sbjct 1360223 GGTTGGATTTCTTGTTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCT 1360282 Query 244839 GGGCGACGAGGA 244850 | || | |||| Sbjct 1360283 GAGCCTCCAGGA 1360294 >seq8 Length=2307048 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 ||||| || | |||| |||||||| ||| ||||| || || | ||||||||| | Sbjct 630941 TCAAATACGTGTTGGCATTCTTCGCTGCCAGCGACGGTATCGTGATGGAGAACCTGTCGG 631000 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | |||||||| ||||||||| |||||| ||| ||||||||||||||||| | Sbjct 631001 CGCGGTTCATGTCGGAGGTGCAGGTGCCTGAGGCCCGCGCATTCTACGGCTTCCAGATTG 631060 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTAC 42560 |||| || |||||||| ||| ||||| Sbjct 631061 CCATGGAAAACGTGCATAGCGAGATGTAC 631089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324432895760