Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq67 100 2e-16
seq35 93.3 3e-14
seq48 91.5 1e-13
>seq67
Length=753185
Score = 100 bits (110), Expect = 2e-16
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| |||||||||||||| ||||||||||||||||| |||||||| || |||
Sbjct 68279 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 68338
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| || | || |||| ||||||||||| || ||||| |||||||| ||
Sbjct 68339 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68391
Score = 100 bits (110), Expect = 2e-16
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| |||||||||||||| |||||||| |||||||| |||||||| || ||
Sbjct 68651 ACCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGC 68710
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
|| || | || |||| ||||||||||| || ||||| |||||||| |||
Sbjct 68711 CAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCC 68765
>seq35
Length=1396082
Score = 93.3 bits (102), Expect = 3e-14
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| || | ||||||||||||||||||||||| || |||
Sbjct 1305120 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305061
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
| | || || | || |||| |||||||| ||||| ||||| |||||||| |||
Sbjct 1305060 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCC 1305007
Score = 93.3 bits (102), Expect = 3e-14
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| || | ||||||||||||||||||||||| || |||
Sbjct 1305472 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305413
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
| | || || | || |||| |||||||| ||||| ||||| |||||||| |||
Sbjct 1305412 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCC 1305359
Score = 93.3 bits (102), Expect = 3e-14
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| || | ||||||||||||||||||||||| || |||
Sbjct 1305843 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305784
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
| | || || | || |||| |||||||| ||||| ||||| |||||||| |||
Sbjct 1305783 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCC 1305730
Score = 93.3 bits (102), Expect = 3e-14
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| || | ||||||||||||||||||||||| || |||
Sbjct 1306214 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1306155
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
| | || || | || |||| |||||||| ||||| ||||| |||||||| |||
Sbjct 1306154 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCC 1306101
>seq48
Length=1037572
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 33907 CTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT 33966
|| || |||| |||||| || | ||||||||||||||| ||||||||||| || |
Sbjct 716601 CTAAGGCGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTG 716542
Query 33967 CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
||| | || || | ||||||||| ||||| |||| ||||||||||||
Sbjct 716541 CGCCCATCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATCC 716494
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| ||||| ||||| || || |||||||||||||| || ||||| ||||||
Sbjct 716298 CCGCCGCGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCC 716239
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| ||| | || || | ||||||||| || || |||| |||||||| ||
Sbjct 716238 AGCGTACGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTC 716186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397056346163302
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |