Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq67 100 2e-16 seq35 93.3 3e-14 seq48 91.5 1e-13 >seq67 Length=753185 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||||||| ||||||||||||||||| |||||||| || ||| Sbjct 68279 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 68338 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| ||||||||||| || ||||| |||||||| || Sbjct 68339 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68391 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||||||||| |||||||| |||||||| |||||||| || || Sbjct 68651 ACCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGC 68710 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || | || |||| ||||||||||| || ||||| |||||||| ||| Sbjct 68711 CAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCC 68765 >seq35 Length=1396082 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || | ||||||||||||||||||||||| || ||| Sbjct 1305120 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305061 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | || || | || |||| |||||||| ||||| ||||| |||||||| ||| Sbjct 1305060 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCC 1305007 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || | ||||||||||||||||||||||| || ||| Sbjct 1305472 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305413 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | || || | || |||| |||||||| ||||| ||||| |||||||| ||| Sbjct 1305412 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCC 1305359 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || | ||||||||||||||||||||||| || ||| Sbjct 1305843 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305784 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | || || | || |||| |||||||| ||||| ||||| |||||||| ||| Sbjct 1305783 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCC 1305730 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || | ||||||||||||||||||||||| || ||| Sbjct 1306214 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1306155 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | || || | || |||| |||||||| ||||| ||||| |||||||| ||| Sbjct 1306154 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCC 1306101 >seq48 Length=1037572 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 33907 CTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT 33966 || || |||| |||||| || | ||||||||||||||| ||||||||||| || | Sbjct 716601 CTAAGGCGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTG 716542 Query 33967 CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| | || || | ||||||||| ||||| |||| |||||||||||| Sbjct 716541 CGCCCATCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATCC 716494 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||| ||||| || || |||||||||||||| || ||||| |||||| Sbjct 716298 CCGCCGCGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCC 716239 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || || | ||||||||| || || |||| |||||||| || Sbjct 716238 AGCGTACGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTC 716186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397056346163302