Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq35 107 2e-18
seq94 82.4 9e-11
>seq35
Length=1396082
Score = 107 bits (118), Expect = 2e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| || |||||||| |||||||||||||| || |||||| || || ||||| || ||
Sbjct 1268972 GTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGTTAGGCCGGGCATCAGGCC 1268913
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|| ||||| | ||||||||| ||||| || || ||| ||||| |||||||||
Sbjct 1268912 GCGTTTCTTGAGCCAGAAAATGCTGCAAAACGAGCCGCTGAAAAAGATACCCTCCACAGC 1268853
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209
|||||| || | || ||||| | |||||||
Sbjct 1268852 CGCGAAGGCTACCAGCCGCTCCGGGAAGGAGC 1268821
Score = 93.3 bits (102), Expect = 5e-14
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACC 113922
||||||||| || | || || || | | | |||| || |||||| |||||| ||
Sbjct 1358501 CCAGAGACCCATTCTGTTCAGGTCGTGAAGCAAGTGCTGGTTCACAACAGTAAACTCGCC 1358560
Query 113923 CGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 113982
|| | ||| | | || || || | ||||| |||||||||||||| ||||| ||
Sbjct 1358561 CGATAACACGCGCCGAACGTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 1358620
Query 113983 CAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 114038
|| ||| |||| || ||||||||||||||||| || | | |||||||| ||||
Sbjct 1358621 CAGGATCTGGGACGTCGAGGCTGTGGGCATGGGGGCAACCAAGAGGCTGTTCCGGA 1358676
>seq94
Length=360037
Score = 82.4 bits (90), Expect = 9e-11
Identities = 141/203 (69%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 52053 GTGGAACATCAT--CGCTGAACCACCCAACATCATGATGAGCTTCACCTCGGGGGCAACG 52110
||||||||| || ||||| || |||| | ||||| ||||||| ||||||||||||
Sbjct 36477 GTGGAACATGATGGCGCTG--CCGCCCAGCGCCATGAGCAGCTTCAGCTCGGGGGCAACC 36534
Query 52111 TTCACCTTAGAGCGGTACTTCACGTAGAGTTCCTCAAACACACCATCGTAGTCATCCACA 52170
| |||| |||||| ||| || |||||||| | |||| ||||| | |
Sbjct 36535 CTGGCCTTGCCCTTGTACTTTTCGTGCAGCTCCTCAAAGATCTCATCATAGTCGCCGATG 36594
Query 52171 TTCTCCATGACGGACTCAGACCAACCCTCAAGTTGGATCTCAAATGGATTGTACCTTTTG 52230
|| || ||| | ||| ||||| || || || | ||| |||||||| | | | | |
Sbjct 36595 TTGTCGGTGATGCTCTCTGACCAGCCATCCAGCTTGATGTCAAATGGGTCGAAGCGGCCG 36654
Query 52231 TTGAGGAACTCCAGACCCGTCAC 52253
||||||||||| | |||| |||
Sbjct 36655 TTGAGGAACTCGACGCCCGACAC 36677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597344258883080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |