Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq35 107 2e-18 seq94 82.4 9e-11 >seq35 Length=1396082 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| |||||||||||||| || |||||| || || ||||| || || Sbjct 1268972 GTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGTTAGGCCGGGCATCAGGCC 1268913 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | ||||||||| ||||| || || ||| ||||| ||||||||| Sbjct 1268912 GCGTTTCTTGAGCCAGAAAATGCTGCAAAACGAGCCGCTGAAAAAGATACCCTCCACAGC 1268853 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 |||||| || | || ||||| | ||||||| Sbjct 1268852 CGCGAAGGCTACCAGCCGCTCCGGGAAGGAGC 1268821 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACC 113922 ||||||||| || | || || || | | | |||| || |||||| |||||| || Sbjct 1358501 CCAGAGACCCATTCTGTTCAGGTCGTGAAGCAAGTGCTGGTTCACAACAGTAAACTCGCC 1358560 Query 113923 CGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 113982 || | ||| | | || || || | ||||| |||||||||||||| ||||| || Sbjct 1358561 CGATAACACGCGCCGAACGTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 1358620 Query 113983 CAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 114038 || ||| |||| || ||||||||||||||||| || | | |||||||| |||| Sbjct 1358621 CAGGATCTGGGACGTCGAGGCTGTGGGCATGGGGGCAACCAAGAGGCTGTTCCGGA 1358676 >seq94 Length=360037 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 52053 GTGGAACATCAT--CGCTGAACCACCCAACATCATGATGAGCTTCACCTCGGGGGCAACG 52110 ||||||||| || ||||| || |||| | ||||| ||||||| |||||||||||| Sbjct 36477 GTGGAACATGATGGCGCTG--CCGCCCAGCGCCATGAGCAGCTTCAGCTCGGGGGCAACC 36534 Query 52111 TTCACCTTAGAGCGGTACTTCACGTAGAGTTCCTCAAACACACCATCGTAGTCATCCACA 52170 | |||| |||||| ||| || |||||||| | |||| ||||| | | Sbjct 36535 CTGGCCTTGCCCTTGTACTTTTCGTGCAGCTCCTCAAAGATCTCATCATAGTCGCCGATG 36594 Query 52171 TTCTCCATGACGGACTCAGACCAACCCTCAAGTTGGATCTCAAATGGATTGTACCTTTTG 52230 || || ||| | ||| ||||| || || || | ||| |||||||| | | | | | Sbjct 36595 TTGTCGGTGATGCTCTCTGACCAGCCATCCAGCTTGATGTCAAATGGGTCGAAGCGGCCG 36654 Query 52231 TTGAGGAACTCCAGACCCGTCAC 52253 ||||||||||| | |||| ||| Sbjct 36655 TTGAGGAACTCGACGCCCGACAC 36677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344258883080