Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq48 98.7 1e-15
seq35 95.1 1e-14
seq67 89.7 6e-13
>seq48
Length=1037572
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| |||| |||| |||||||||||| || |||||||| || ||||| || ||| |
Sbjct 716287 ACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCCAGCGTACGCCC 716228
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096
|| ||||| ||||| |||||||| || | |||||||||||||
Sbjct 716227 ATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCGG 716184
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||||||||| ||||| ||||||||||| || || |||||||| || || || ||| |
Sbjct 716595 CGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGCCCA 716536
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| ||||| ||||| ||||| || || | |||||||| ||
Sbjct 716535 TCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATC 716495
>seq35
Length=1396082
Score = 95.1 bits (104), Expect = 1e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || |
Sbjct 1305109 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305050
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| || |||||||| ||||| || || || |||||||||||
Sbjct 1305049 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305008
Score = 95.1 bits (104), Expect = 1e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || |
Sbjct 1305461 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305402
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| || |||||||| ||||| || || || |||||||||||
Sbjct 1305401 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305360
Score = 95.1 bits (104), Expect = 1e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || |
Sbjct 1305832 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305773
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| || |||||||| ||||| || || || |||||||||||
Sbjct 1305772 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305731
Score = 95.1 bits (104), Expect = 1e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || |
Sbjct 1306203 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1306144
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| || |||||||| ||||| || || || |||||||||||
Sbjct 1306143 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1306102
>seq67
Length=753185
Score = 89.7 bits (98), Expect = 6e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||||| ||| | ||||||||||| || || ||||| |||||||| || || |
Sbjct 68290 ACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCC 68349
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| || |||||||| || ||||| || || |||||||||||
Sbjct 68350 ATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68391
Score = 86.0 bits (94), Expect = 7e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||||| ||| | ||||| ||||| || || ||||| |||||||| || || |
Sbjct 68663 ACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCC 68722
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| || |||||||| || ||||| || || |||||||||||
Sbjct 68723 ATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543204305509840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |