Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq48 98.7 1e-15 seq35 95.1 1e-14 seq67 89.7 6e-13 >seq48 Length=1037572 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| |||| |||||||||||| || |||||||| || ||||| || ||| | Sbjct 716287 ACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCCAGCGTACGCCC 716228 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096 || ||||| ||||| |||||||| || | ||||||||||||| Sbjct 716227 ATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCGG 716184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||| ||||| ||||||||||| || || |||||||| || || || ||| | Sbjct 716595 CGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGCCCA 716536 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || ||||| ||||| ||||| || || | |||||||| || Sbjct 716535 TCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATC 716495 >seq35 Length=1396082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || | Sbjct 1305109 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305050 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| ||||| || || || ||||||||||| Sbjct 1305049 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || | Sbjct 1305461 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305402 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| ||||| || || || ||||||||||| Sbjct 1305401 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305360 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || | Sbjct 1305832 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305773 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| ||||| || || || ||||||||||| Sbjct 1305772 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305731 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || | Sbjct 1306203 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1306144 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| ||||| || || || ||||||||||| Sbjct 1306143 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1306102 >seq67 Length=753185 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| ||| | ||||||||||| || || ||||| |||||||| || || | Sbjct 68290 ACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCC 68349 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || ||||| || || ||||||||||| Sbjct 68350 ATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68391 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| ||| | ||||| ||||| || || ||||| |||||||| || || | Sbjct 68663 ACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCC 68722 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || ||||| || || ||||||||||| Sbjct 68723 ATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543204305509840