Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq35 105 7e-18 >seq35 Length=1396082 Score = 105 bits (116), Expect = 7e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 94468 ATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAAC 94527 ||| |||| | |||||||||||||| | || ||||| |||| ||||||||| |||| Sbjct 1360295 ATCCTGGAGGCTCAGGTGGAGACGGGCAATCCGTACATGTTGTACAAGGACTCGTGCAAC 1360236 Query 94528 GCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATT 94587 || |||||||||||| |||| || |||||| | || |||||||||||||||||| Sbjct 1360235 AAGAAATCCAACCAGCAGAACCTGGGCACTATCAAGTGTTCCAATCTGTGCACCGAGATT 1360176 Query 94588 GTCGAGTATAC 94598 | ||||| || Sbjct 1360175 ATTGAGTACAC 1360165 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 95101 GTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAA 95160 || |||||||||||||| ||||| ||| | |||||||| ||||||||||||| || || Sbjct 1358659 GTTGCCCCCATGCCCACAGCCTCGACGTCCCAGATCCTGGGCAACAACGAGTGCTTTGAG 1358600 Query 95161 CCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAAC 95220 |||| |||||| ||| | ||| |||| ||| | | || || || | || | ||| Sbjct 1358599 CCCTACACCTCGAACATTTACGTTCGGCGCGTGTTATCGGGCGAGTTTACTGTTGTGAAC 1358540 Query 95221 AAGCACCTCCTACGGGACCTGA 95242 ||||| | || | ||||||| Sbjct 1358539 CAGCACTTGCTTCACGACCTGA 1358518 Score = 86.0 bits (94), Expect = 6e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 || ||||||||||| || || | | | ||||| | ||||| |||| ||||||||||| Sbjct 1360803 TATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATCGAGCCCTGG 1360744 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGG 94263 || |||||||| | || | || ||||| ||||| |||||||| || || | | Sbjct 1360743 CATGCGGACGTCTTCGAGTTTTTGGATCTGCGCAAGAATCACGGCAAGGAGGAGGCGCGC 1360684 Query 94264 GCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || | || || ||||||| || ||| | || ||||| || ||| Sbjct 1360683 GCGCGTGATCTGTTCTACGGCCTTTGGATTCCGGACCTGTTCATG 1360639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494715463765960