Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq10 188 9e-43 seq28 86.0 8e-12 seq65 84.2 3e-11 >seq10 Length=2191866 Score = 188 bits (208), Expect = 9e-43 Identities = 204/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 8254 CCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGA 8313 ||||||||| |||||||| |||||||| || || ||||| || || || ||||||||||| Sbjct 2092106 CCACTCATCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTTAGA 2092165 Query 8314 AGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGG 8373 || |||||||||||||| | |||||||||||| ||||| | || ||||| | || || Sbjct 2092166 AGTTGGAACAACAGCACCTGTGATGATGTTGTTACCATAAAGAAGAGAACCTGAAACTGG 2092225 Query 8374 TTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAA 8432 |||||| || || || ||||| || || |||||||||| |||||||| ||| || || | Sbjct 2092226 TTCACGAATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATACTGA 2092285 Query 8433 TAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGAT 8492 | | |||| || || || ||||| | |||||||||||||||| || || || | Sbjct 2092286 T-GTTGCAGTAAGAAGACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGCGGT 2092344 Query 8493 TGTTGGTGGAGGTTACCCAGTTACAGAA 8520 | | || || || | ||| | ||| || Sbjct 2092345 TCTCAGTTGAAGTGATCCACTCACAAAA 2092372 >seq28 Length=1566407 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 10260 AACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCT 10319 ||| |||||||||| | | ||||| || ||||| | ||||| ||||| || ||||| Sbjct 192522 AACGCAGGTCAGAACGTAGCCAGCCTCCATCTGCTTGTCATCCAGGAAGCTCTGGTCGCT 192581 Query 10320 TTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCA 10379 || || || || || || | | ||||| || || || || ||||||||||| ||||| Sbjct 192582 CTGGTCCACGGTGCCGGACACAACCTTGCCGGCGCAGCTGGAGCAGGCACCAGCGCGGCA 192641 Query 10380 CGAGTAGTTGAGGTCAATGCCTGCTTC 10406 |||||| ||||| | ||| || || Sbjct 192642 CGAGTATGGCAGGTCCAGGCCAGCCTC 192668 >seq65 Length=794414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 7766 GAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGC 7821 ||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| Sbjct 544511 GAGTTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCATGAGCAGC 544456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622115071523440