Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq35 113 6e-20 seq94 86.0 8e-12 >seq35 Length=1396082 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| |||||||||||||| || |||||| || || ||||| || || Sbjct 1268972 GTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGTTAGGCCGGGCATCAGGCC 1268913 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| | ||||||||| ||||| ||||| ||| ||||| ||||||||| Sbjct 1268912 GCGTTTCTTGAGCCAGAAAATGCTGCAAAACGAGCCGCTGAAAAAGATACCCTCCACAGC 1268853 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGC 127682 |||||| || | || ||||| | ||||||| Sbjct 1268852 CGCGAAGGCTACCAGCCGCTCCGGGAAGGAGC 1268821 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||||||||| || | || || || | | | ||||| || |||||| |||||| || Sbjct 1358501 CCAGAGACCCATTCTGTTCAGGTCGTGAAGCAAGTGCTGGTTCACAACAGTAAACTCGCC 1358560 Query 115884 CGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 115943 || | ||| | | || ||||| | ||||| |||||||||||||| ||||| || Sbjct 1358561 CGATAACACGCGCCGAACGTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 1358620 Query 115944 CAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 || ||| |||| || ||||||||||||||||| || | | |||||||| |||| Sbjct 1358621 CAGGATCTGGGACGTCGAGGCTGTGGGCATGGGGGCAACCAAGAGGCTGTTCCGGA 1358676 >seq94 Length=360037 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 55485 GTGGAACATCAT--CGCTGAACCACCCAACATCATGATGAGCTTCACCTCGGGGGCAACG 55542 ||||||||| || ||||| || |||| | ||||| ||||||| |||||||||||| Sbjct 36477 GTGGAACATGATGGCGCTG--CCGCCCAGCGCCATGAGCAGCTTCAGCTCGGGGGCAACC 36534 Query 55543 TTCACCTTAGAGCGGTACTTCACGTAGAGTTCCTCAAATACACCATCGTAGTCATCCACA 55602 | |||| |||||| ||| || |||||||| | |||| ||||| | | Sbjct 36535 CTGGCCTTGCCCTTGTACTTTTCGTGCAGCTCCTCAAAGATCTCATCATAGTCGCCGATG 36594 Query 55603 TTCTCCATGACGGACTCAGACCAACCCTCAAGTTGGATCTCAAATGGGTTGTACCTTTTG 55662 || || ||| | ||| ||||| || || || | ||| |||||||||| | | | | Sbjct 36595 TTGTCGGTGATGCTCTCTGACCAGCCATCCAGCTTGATGTCAAATGGGTCGAAGCGGCCG 36654 Query 55663 TTGAGGAACTCCAGACCCGTCAC 55685 ||||||||||| | |||| ||| Sbjct 36655 TTGAGGAACTCGACGCCCGACAC 36677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497606281160