Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq67 104 6e-17 seq35 84.2 5e-11 >seq67 Length=753185 Score = 104 bits (114), Expect = 6e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||| || ||||| |||| |||||||||||||| || Sbjct 68658 CGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCCAGGGTA 68717 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| |||||||| || |||||||||||||||||| ||| ||| Sbjct 68718 CGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCT 68777 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||| || |||||| |||| |||||||||||||| || Sbjct 68285 CGCAGACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTA 68344 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| |||||||| || |||||||||||||| || Sbjct 68345 CGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGG 68394 >seq35 Length=1396082 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||||||| |||| ||| | ||||| ||||||||||| || || || Sbjct 1305085 CTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 1305026 Query 199498 GATGAGACGCTGCTGGTCCGG 199518 || ||||||||||||||||| Sbjct 1305025 AATCAGACGCTGCTGGTCCGG 1305005 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||||||| |||| ||| | ||||| ||||||||||| || || || Sbjct 1305437 CTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 1305378 Query 199498 GATGAGACGCTGCTGGTCCGG 199518 || ||||||||||||||||| Sbjct 1305377 AATCAGACGCTGCTGGTCCGG 1305357 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||||||| |||| ||| | ||||| ||||||||||| || || || Sbjct 1305808 CTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 1305749 Query 199498 GATGAGACGCTGCTGGTCCGG 199518 || ||||||||||||||||| Sbjct 1305748 AATCAGACGCTGCTGGTCCGG 1305728 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||||||| |||| ||| | ||||| ||||||||||| || || || Sbjct 1306179 CTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 1306120 Query 199498 GATGAGACGCTGCTGGTCCGG 199518 || ||||||||||||||||| Sbjct 1306119 AATCAGACGCTGCTGGTCCGG 1306099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178902703728817