Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq35 120 3e-22
seq67 104 2e-17
>seq35
Length=1396082
Score = 120 bits (132), Expect = 3e-22
Identities = 124/160 (78%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950
|| ||| || |||||||| |||| |||||||| | ||| ||||||||||| ||| ||
Sbjct 1268990 CAGGCAGGCGAAGTCGCAGTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGT 1268931
Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAAC-TGCCCGAAA 133009
| ||||||||| ||||||||||| |||||||| || || || || |||| ||| |
Sbjct 1268930 TAGGCCGGGCATCAGGCCGCGTTTCTTGAGCCAGAAAAT-GCTGCAAAACGAGCCGCTGA 1268872
Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049
| |||| ||||| || |||||||| || ||||| |||||
Sbjct 1268871 AAAAGATACCCTCCACAGCCGCGAAGGCTACCAGCCGCTC 1268832
>seq67
Length=753185
Score = 104 bits (114), Expect = 2e-17
Identities = 100/126 (79%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| |||||| | ||||| ||||| || |||| ||| ||||| |||||||| || | ||
Sbjct 68403 GGCATTCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68344
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464
||||| |||||||||||||| ||||| ||| ||||| ||| ||||||||||| || |
Sbjct 68343 ACCCTGGCTGACTACAACATCCAGAAGGAGAGC-ACGCTCCATCTGGTGCTGCGTCTGCG 68285
Query 38465 AGGCGG 38470
|||||
Sbjct 68284 CGGCGG 68279
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| ||||| | ||||| ||||| || |||| ||| ||||| |||||||| || | ||
Sbjct 68776 GGCATTCCTCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68717
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465
||||| |||||||||||||| |||||| ||||| ||| ||||||||||| || |
Sbjct 68716 ACCCTGGCTGACTACAACATCCAGAAGGAAAGCACGCTCCATCTGGTGCTGCGTCTGCGC 68657
Query 38466 GGCGG 38470
|||||
Sbjct 68656 GGCGG 68652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500164978547840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |