Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq35 120 3e-22 seq67 104 2e-17 >seq35 Length=1396082 Score = 120 bits (132), Expect = 3e-22 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| || |||||||| |||| |||||||| | ||| ||||||||||| ||| || Sbjct 1268990 CAGGCAGGCGAAGTCGCAGTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGT 1268931 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAAC-TGCCCGAAA 133009 | ||||||||| ||||||||||| |||||||| || || || || |||| ||| | Sbjct 1268930 TAGGCCGGGCATCAGGCCGCGTTTCTTGAGCCAGAAAAT-GCTGCAAAACGAGCCGCTGA 1268872 Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | |||| ||||| || |||||||| || ||||| ||||| Sbjct 1268871 AAAAGATACCCTCCACAGCCGCGAAGGCTACCAGCCGCTC 1268832 >seq67 Length=753185 Score = 104 bits (114), Expect = 2e-17 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || |||| ||| ||||| |||||||| || | || Sbjct 68403 GGCATTCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68344 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||||| |||||||||||||| ||||| ||| ||||| ||| ||||||||||| || | Sbjct 68343 ACCCTGGCTGACTACAACATCCAGAAGGAGAGC-ACGCTCCATCTGGTGCTGCGTCTGCG 68285 Query 38465 AGGCGG 38470 ||||| Sbjct 68284 CGGCGG 68279 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | ||||| ||||| || |||| ||| ||||| |||||||| || | || Sbjct 68776 GGCATTCCTCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68717 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| |||||| ||||| ||| ||||||||||| || | Sbjct 68716 ACCCTGGCTGACTACAACATCCAGAAGGAAAGCACGCTCCATCTGGTGCTGCGTCTGCGC 68657 Query 38466 GGCGG 38470 ||||| Sbjct 68656 GGCGG 68652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164978547840