Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq4 176 6e-39
seq14 127 3e-24
seq259 84.2 3e-11
seq174 84.2 3e-11
seq154 84.2 3e-11
seq149 84.2 3e-11
seq29 84.2 3e-11
seq9 84.2 3e-11
seq52 82.4 1e-10
seq28 82.4 1e-10
seq21 82.4 1e-10
>seq4
Length=2765396
Score = 176 bits (194), Expect = 6e-39
Identities = 258/365 (71%), Gaps = 0/365 (0%)
Strand=Plus/Minus
Query 7007 CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066
|| || ||||| | ||| || || || || | ||| |||||||| || ||||||||||||
Sbjct 1734616 CCCTCGCCCGTGAGGATAGCTGCCTGCACTGCCGCACCGTATGCAACGGCCTCATCGGGG 1734557
Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126
||||||| || |||| || || ||||| || | ||| | || || |||| ||
Sbjct 1734556 TTAATCGACTTGTTCAACTCCTTGCCGTTGAAGAAGTCCTGCAGCAGCTGCTGAACCTTG 1734497
Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186
|| || || ||||| || ||||||| |||| || | ||| | || || ||||||
Sbjct 1734496 GGAATACGGGTCGAGCCGCCGACCAGCACGACGTCGTGCACAGTGCTCTTGTCCATCTTT 1734437
Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246
| || || || || || || || ||||| || || ||||||| ||||| || ||
Sbjct 1734436 GCATCACGCAGGCACTTCTCAACTGGGTCCATGCACTTGCGGAACAGATCCATGCAAAGC 1734377
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||||||||| || |||||||| || || ||| |||| ||| || | | || |||
Sbjct 1734376 TCCTCAAAACGGGCGCGGGTAATCGAGGTGGCGAAGTCAATGCCCTCAAAGAGAGAGTCA 1734317
Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366
| |||||||| || || || | ||| || | || ||||| |||||||| || || ||
Sbjct 1734316 AGCTCAATGGTAGTCTGAGCAGCCGAGGAGAGAGTGCGCTTGGCGCGCTCGCAAGCGGTG 1734257
Query 7367 CGTAA 7371
|| ||
Sbjct 1734256 CGCAA 1734252
Score = 107 bits (118), Expect = 2e-18
Identities = 172/243 (71%), Gaps = 8/243 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || || ||||||||||| || || || ||||| || || || || ||||||||
Sbjct 1734040 TCGAAGTCCTCGCCACCCAAGTGGGTGTCACCAGCGGTAGCCTTCACCTCGAAGATACCC 1733981
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| ||||| | | | || ||||| || || || || ||||| || ||||| || |||
Sbjct 1733980 TCCTCAATTGTGAGAAGGGATACATCGAAGGTGCCGCCGCCCAGATCGAAAATCAGCACG 1733921
Query 7577 TTCGTATC-----GTCGTCT-TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630
|| || ||| || | ||||| || | ||||| || ||||| || ||||||
Sbjct 1733920 TTGCGCTCACCAAGTCCGCTGTCCTTCTTGTCCAAGCCGTAGGCAATAGCAGCGGCCGTT 1733861
Query 7631 GGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689
|| || || || ||||| || || || ||||||||||| | | ||||| || |||||
Sbjct 1733860 GGCTCGTTGATGATACGGAG-CACCTCAAGGCCAGCAATCATACCGGCATCCTTGGTCGC 1733802
Query 7690 TTG 7692
||
Sbjct 1733801 CTG 1733799
Score = 86.0 bits (94), Expect = 8e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 6520 ACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATC 6579
|| |||||| ||||||| ||||| ||||||||||| ||| ||| || || || |
Sbjct 1735318 ACCGTAGTTCTCGAGACTGTTCTTGGCCTCGACCTTCTTCTTCAACTGCTCGTCGTCGGC 1735259
Query 6580 TTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTT 6639
|| ||||| ||||| || || ||||| || || || || || || | | |||||
Sbjct 1735258 CTTGTACTTCTCCGCCTCCTGCACCATACGCTCGATCTCCTCCTTGGAGAGACGACCCTT 1735199
Query 6640 ATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATT 6699
|| || ||||| |||||||| | ||||||| | |||||| || || |||||
Sbjct 1735198 GTCGTTAGTAATGGTAATCTTGTTCTTGTTACCCGTCGTCTTATCCTCCGCCGACACATT 1735139
Query 6700 CAAAATACCATTTGCATCAACATCGAA 6726
| ||| || || || || | ||| ||
Sbjct 1735138 GAGAATGCCGTTGGCGTCGATATCAAA 1735112
>seq14
Length=2072552
Score = 127 bits (140), Expect = 3e-24
Identities = 154/209 (74%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
||||| |||||||| ||||| | | || |||||||| |||| | |||||||||
Sbjct 607212 CCGATGAGACGCTTCACATCATATATGGTTCGCTTGGGGTTGATGGTGGCCTGGTTCTTC 607271
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
||||| || || | || ||||| | | | || || ||||||||||| || || ||
Sbjct 607272 GCCGCATCTCCCACCAGCCGTTCTGTGT---CGGTGAAGGCGACGTACGAGGGAGTGATT 607328
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116
|| || ||||||||||| || || ||||| |||||| | || | ||||||| ||||||
Sbjct 607329 CGGTTGCCTTGGTCGTTGGCGATGATTTCCACGCGGCCATTCTTGAAGACGCCCACGCAC 607388
Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145
||||| || || || | ||| || |||||
Sbjct 607389 GAATATGTGGTACCCAGATCGATTCCGAT 607417
Score = 105 bits (116), Expect = 8e-18
Identities = 149/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || || |||||| |||| | | ||| |||||||||| | || ||||||||
Sbjct 31036 CCAATTAGGCGCTTTACATCGTAGATGGTGCGCTTGGGGTTCACTGTTGCCTGGTTCTTT 30977
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| ||||| ||||| | || ||| ||| ||||||| ||||| || || || || ||
Sbjct 30976 GCAGCGTCGCCGATCAAGCGCTCACTAT---CCGTAAAGGCGACATATGAAGGCGTAATT 30920
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116
|| || || ||||| || ||||| || || || || | || | |||||||||||||
Sbjct 30919 CGGTTACCCTGGTCATTAGCAATGATCTCCACACGACCATTCTTGTAGACGCCGACGCAA 30860
Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145
|| || || || || || || || |||||
Sbjct 30859 GAGTAGGTGGTGCCCAAGTCGATGCCGAT 30831
>seq259
Length=16452
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 15805 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 15864
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 15865 CAGGTTCAAATCCTGCCCGTATCA 15888
>seq174
Length=46442
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 691 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 632
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 631 CAGGTTCAAATCCTGCCCGTATCA 608
>seq154
Length=66032
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 65839 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 65898
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 65899 CAGGTTCAAATCCTGCCCGTATCA 65922
>seq149
Length=75538
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 38183 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 38124
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 38123 CAGGTTCAAATCCTGCCCGTATCA 38100
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 40145 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 40086
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 40085 CAGGTTCAAATCCTGCCCGTATCA 40062
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 69368 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 69427
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 69428 CAGGTTCAAATCCTGCCCGTATCA 69451
>seq29
Length=1535765
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 1227527 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 1227586
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 1227587 CAGGTTCAAATCCTGCCCGTATCA 1227610
>seq9
Length=2229794
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 579069 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 579010
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 579009 CAGGTTCAAATCCTGCCCGTATCA 578986
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 583214 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 583155
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 583154 CAGGTTCAAATCCTGCCCGTATCA 583131
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838
||||| | | ||||||||||||||||||||| ||||||||||| | || ||| |||
Sbjct 584411 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 584352
Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862
||||||||||||||| | | ||||
Sbjct 584351 CAGGTTCAAATCCTGCCCGTATCA 584328
>seq52
Length=974230
Score = 82.4 bits (90), Expect = 1e-10
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 131780 TGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGC 131839
|||| | | ||||||||||||||||||||| |||| |||||| | || ||| ||||
Sbjct 899675 TGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTTAGGCTCCTATCCGTAAGGGCGC 899616
Query 131840 AGGTTCAAATCCTGTCGGCATCA 131862
|||||||||||||||| | ||||
Sbjct 899615 AGGTTCAAATCCTGTCCGTATCA 899593
>seq28
Length=1566407
Score = 82.4 bits (90), Expect = 1e-10
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848
||||||||||||||||||||| ||||||||||| | || ||| |||||||||||||
Sbjct 365884 GTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCGCAGGTTCAAA 365943
Query 131849 TCCTGTCGGCATCAC 131863
||||| | | |||||
Sbjct 365944 TCCTGCCCGTATCAC 365958
>seq21
Length=1815396
Score = 82.4 bits (90), Expect = 1e-10
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848
||||||||||||||||||||| ||||||||||| | || ||| |||||||||||||
Sbjct 103214 GTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCGCAGGTTCAAA 103155
Query 131849 TCCTGTCGGCATCAC 131863
||||| | | |||||
Sbjct 103154 TCCTGCCCGTATCAC 103140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635122868110840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |