Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 176 6e-39 seq14 127 3e-24 seq259 84.2 3e-11 seq174 84.2 3e-11 seq154 84.2 3e-11 seq149 84.2 3e-11 seq29 84.2 3e-11 seq9 84.2 3e-11 seq52 82.4 1e-10 seq28 82.4 1e-10 seq21 82.4 1e-10 >seq4 Length=2765396 Score = 176 bits (194), Expect = 6e-39 Identities = 258/365 (71%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 7007 CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066 || || ||||| | ||| || || || || | ||| |||||||| || |||||||||||| Sbjct 1734616 CCCTCGCCCGTGAGGATAGCTGCCTGCACTGCCGCACCGTATGCAACGGCCTCATCGGGG 1734557 Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126 ||||||| || |||| || || ||||| || | ||| | || || |||| || Sbjct 1734556 TTAATCGACTTGTTCAACTCCTTGCCGTTGAAGAAGTCCTGCAGCAGCTGCTGAACCTTG 1734497 Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 || || || ||||| || ||||||| |||| || | ||| | || || |||||| Sbjct 1734496 GGAATACGGGTCGAGCCGCCGACCAGCACGACGTCGTGCACAGTGCTCTTGTCCATCTTT 1734437 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 | || || || || || || || ||||| || || ||||||| ||||| || || Sbjct 1734436 GCATCACGCAGGCACTTCTCAACTGGGTCCATGCACTTGCGGAACAGATCCATGCAAAGC 1734377 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||||||||| || |||||||| || || ||| |||| ||| || | | || ||| Sbjct 1734376 TCCTCAAAACGGGCGCGGGTAATCGAGGTGGCGAAGTCAATGCCCTCAAAGAGAGAGTCA 1734317 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | |||||||| || || || | ||| || | || ||||| |||||||| || || || Sbjct 1734316 AGCTCAATGGTAGTCTGAGCAGCCGAGGAGAGAGTGCGCTTGGCGCGCTCGCAAGCGGTG 1734257 Query 7367 CGTAA 7371 || || Sbjct 1734256 CGCAA 1734252 Score = 107 bits (118), Expect = 2e-18 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||||||||| || || || ||||| || || || || |||||||| Sbjct 1734040 TCGAAGTCCTCGCCACCCAAGTGGGTGTCACCAGCGGTAGCCTTCACCTCGAAGATACCC 1733981 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | | || ||||| || || || || ||||| || ||||| || ||| Sbjct 1733980 TCCTCAATTGTGAGAAGGGATACATCGAAGGTGCCGCCGCCCAGATCGAAAATCAGCACG 1733921 Query 7577 TTCGTATC-----GTCGTCT-TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 || || ||| || | ||||| || | ||||| || ||||| || |||||| Sbjct 1733920 TTGCGCTCACCAAGTCCGCTGTCCTTCTTGTCCAAGCCGTAGGCAATAGCAGCGGCCGTT 1733861 Query 7631 GGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 || || || || ||||| || || || ||||||||||| | | ||||| || ||||| Sbjct 1733860 GGCTCGTTGATGATACGGAG-CACCTCAAGGCCAGCAATCATACCGGCATCCTTGGTCGC 1733802 Query 7690 TTG 7692 || Sbjct 1733801 CTG 1733799 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 6520 ACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATC 6579 || |||||| ||||||| ||||| ||||||||||| ||| ||| || || || | Sbjct 1735318 ACCGTAGTTCTCGAGACTGTTCTTGGCCTCGACCTTCTTCTTCAACTGCTCGTCGTCGGC 1735259 Query 6580 TTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTT 6639 || ||||| ||||| || || ||||| || || || || || || | | ||||| Sbjct 1735258 CTTGTACTTCTCCGCCTCCTGCACCATACGCTCGATCTCCTCCTTGGAGAGACGACCCTT 1735199 Query 6640 ATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATT 6699 || || ||||| |||||||| | ||||||| | |||||| || || ||||| Sbjct 1735198 GTCGTTAGTAATGGTAATCTTGTTCTTGTTACCCGTCGTCTTATCCTCCGCCGACACATT 1735139 Query 6700 CAAAATACCATTTGCATCAACATCGAA 6726 | ||| || || || || | ||| || Sbjct 1735138 GAGAATGCCGTTGGCGTCGATATCAAA 1735112 >seq14 Length=2072552 Score = 127 bits (140), Expect = 3e-24 Identities = 154/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| |||||||| ||||| | | || |||||||| |||| | ||||||||| Sbjct 607212 CCGATGAGACGCTTCACATCATATATGGTTCGCTTGGGGTTGATGGTGGCCTGGTTCTTC 607271 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 ||||| || || | || ||||| | | | || || ||||||||||| || || || Sbjct 607272 GCCGCATCTCCCACCAGCCGTTCTGTGT---CGGTGAAGGCGACGTACGAGGGAGTGATT 607328 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || ||||||||||| || || ||||| |||||| | || | ||||||| |||||| Sbjct 607329 CGGTTGCCTTGGTCGTTGGCGATGATTTCCACGCGGCCATTCTTGAAGACGCCCACGCAC 607388 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 ||||| || || || | ||| || ||||| Sbjct 607389 GAATATGTGGTACCCAGATCGATTCCGAT 607417 Score = 105 bits (116), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || |||||| |||| | | ||| |||||||||| | || |||||||| Sbjct 31036 CCAATTAGGCGCTTTACATCGTAGATGGTGCGCTTGGGGTTCACTGTTGCCTGGTTCTTT 30977 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| ||||| | || ||| ||| ||||||| ||||| || || || || || Sbjct 30976 GCAGCGTCGCCGATCAAGCGCTCACTAT---CCGTAAAGGCGACATATGAAGGCGTAATT 30920 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || ||||| || ||||| || || || || | || | ||||||||||||| Sbjct 30919 CGGTTACCCTGGTCATTAGCAATGATCTCCACACGACCATTCTTGTAGACGCCGACGCAA 30860 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 || || || || || || || || ||||| Sbjct 30859 GAGTAGGTGGTGCCCAAGTCGATGCCGAT 30831 >seq259 Length=16452 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 15805 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 15864 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 15865 CAGGTTCAAATCCTGCCCGTATCA 15888 >seq174 Length=46442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 691 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 632 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 631 CAGGTTCAAATCCTGCCCGTATCA 608 >seq154 Length=66032 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 65839 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 65898 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 65899 CAGGTTCAAATCCTGCCCGTATCA 65922 >seq149 Length=75538 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 38183 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 38124 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 38123 CAGGTTCAAATCCTGCCCGTATCA 38100 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 40145 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 40086 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 40085 CAGGTTCAAATCCTGCCCGTATCA 40062 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 69368 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 69427 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 69428 CAGGTTCAAATCCTGCCCGTATCA 69451 >seq29 Length=1535765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 1227527 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 1227586 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 1227587 CAGGTTCAAATCCTGCCCGTATCA 1227610 >seq9 Length=2229794 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 579069 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 579010 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 579009 CAGGTTCAAATCCTGCCCGTATCA 578986 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 583214 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 583155 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 583154 CAGGTTCAAATCCTGCCCGTATCA 583131 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 131779 TTGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCG 131838 ||||| | | ||||||||||||||||||||| ||||||||||| | || ||| ||| Sbjct 584411 TTGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCG 584352 Query 131839 CAGGTTCAAATCCTGTCGGCATCA 131862 ||||||||||||||| | | |||| Sbjct 584351 CAGGTTCAAATCCTGCCCGTATCA 584328 >seq52 Length=974230 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 131780 TGTGATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGC 131839 |||| | | ||||||||||||||||||||| |||| |||||| | || ||| |||| Sbjct 899675 TGTGGTACGGTGGCCGAGTGGTCTAAGGCGTAGGATTTAGGCTCCTATCCGTAAGGGCGC 899616 Query 131840 AGGTTCAAATCCTGTCGGCATCA 131862 |||||||||||||||| | |||| Sbjct 899615 AGGTTCAAATCCTGTCCGTATCA 899593 >seq28 Length=1566407 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 ||||||||||||||||||||| ||||||||||| | || ||| ||||||||||||| Sbjct 365884 GTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCGCAGGTTCAAA 365943 Query 131849 TCCTGTCGGCATCAC 131863 ||||| | | ||||| Sbjct 365944 TCCTGCCCGTATCAC 365958 >seq21 Length=1815396 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 ||||||||||||||||||||| ||||||||||| | || ||| ||||||||||||| Sbjct 103214 GTGGCCGAGTGGTCTAAGGCGTAGGATTAAGGCTCCTATCCGCAAGGGCGCAGGTTCAAA 103155 Query 131849 TCCTGTCGGCATCAC 131863 ||||| | | ||||| Sbjct 103154 TCCTGCCCGTATCAC 103140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122868110840