Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8 116 5e-21 seq35 91.5 2e-13 >seq8 Length=2307048 Score = 116 bits (128), Expect = 5e-21 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || || ||||| ||||| || || ||||| | |||||| | || || || || ||| Sbjct 1093013 CGGTCGAAGCGGCCTGGACGCAGCAGCGCCTGATCAAGCACGTCGGGTCGGTTGGTGGCG 1093072 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || | |||| || ||| || | | ||||| || ||||| || |||| |||||||||| Sbjct 1093073 GCCAGCACAATAACACCCGTGTTGCCCTCAAAGCCGTCCATTTCCGTCAGAAGCTGGTTA 1093132 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 || || || || || |||||||| || | || ||| || || | || || |||| Sbjct 1093133 ATGGTCTGCTCGCGCTCATCATT-GCCGCCA-CCCATGCCGGCGCCACGCTGGCGACCCA 1093190 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGT 16097 | |||||||||||||||||||||| |||||| ||| Sbjct 1093191 CAGCATCAATCTCATCAATGAAGATGATGCAGGGT 1093225 >seq35 Length=1396082 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| | ||||| || | || || ||| ||| ||||||||||| ||| || || Sbjct 1268823 TCCTTCCCGGAGCGGCTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCG 1268882 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || ||| |||| ||||||||||| || || || ||||| || || |||||| ||| Sbjct 1268883 TTTTGCAGCATTTTCTGGCTCAAGAAACGCGGCCTGATGCCCGGCCTAACCTTCTCAAAC 1268942 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || ||||| || |||||||| || ||| Sbjct 1268943 GAACTCATCTCCCGAGACGAGGGGCTGCAC 1268972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732693140720