Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 4e-15 seq35 82.4 9e-11 >seq8 Length=2307048 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/227 (70%), Gaps = 12/227 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || ||||| || || || || | |||||| | ||| ||||| || ||| Sbjct 1093013 CGGTCGAAGCGGCCTGGACGCAGCAGCGCCTGATCAAGCACGTCGGGTCGGTTGGTGGCG 1093072 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | || | || || || | || || ||||||||||| || ||||||||||| Sbjct 1093073 GCCAGCACAATAACACCCGTGTTGCCCTCAAAGCCGTCCATTTCCGTCAGAAGCTGGTTA 1093132 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCG----AACGCTTCTTA 11676 || ||||| || |||||||| ||| | ||||| ||||| ||||| | Sbjct 1093133 ATGGTCTGCTCGCGCTCATCATTGCCG------CCACCCATGCCGGCGCCACGCTGGCGA 1093186 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 || ||||| ||||||||||| ||||| | ||| || ||| ||||| Sbjct 1093187 CCCACAGCATCAATCTCATCAATGAAGATGATGCAGGGTGCCTTGGC 1093233 >seq35 Length=1396082 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAA-CAAGATGCTTGTTGACCACGACAAATTCAC 109732 ||||||||| | | || || |||| || |||| |||| ||| || || ||| || | Sbjct 1358501 CCAGAGACCCATTCTGTTCAGGTCGTGAAGCAAG-TGCTGGTTCACAACAGTAAACTCGC 1358559 Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792 | | | ||| || | ||| ||||| | |||||||| || || ||||| ||||||| Sbjct 1358560 CCGATAACACGCGCCGAACGTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGC 1358619 Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 | ||||| || | || || |||||||||||||| || | | || ||||| |||| Sbjct 1358620 CCAGGATCTGGGACGTCGAGGCTGTGGGCATGGGGGCAACCAAGAGGCTGTTCCGGA 1358676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966789887800