Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq35 113 5e-20 seq8 104 3e-17 >seq35 Length=1396082 Score = 113 bits (124), Expect = 5e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| |||||||| || ||||| ||||||||| |||||| ||||| || || Sbjct 1268972 GTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGTTAGGCCGGGCATCAGGCC 1268913 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || ||||| | ||| |||| ||| || || ||| ||| ||||||||||||||| Sbjct 1268912 GCGTTTCTTGAGCCAGAAAATGCTGCAAAACGAGCCGCTGAAAAAGATACCCTCCACAGC 1268853 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 ||| || || | || ||||| | |||||||| Sbjct 1268852 CGCGAAGGCTACCAGCCGCTCCGGGAAGGAGC 1268821 >seq8 Length=2307048 Score = 104 bits (114), Expect = 3e-17 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || || ||||| |||||||| || ||||| | |||||| | || || || || ||| Sbjct 1093013 CGGTCGAAGCGGCCTGGACGCAGCAGCGCCTGATCAAGCACGTCGGGTCGGTTGGTGGCG 1093072 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | ||||| || ||||| || |||| ||| |||||| Sbjct 1093073 GCCAGCACAATAACACCCGTGTTGCCCTCAAAGCCGTCCATTTCCGTCAGAAGCTGGTTA 1093132 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 || || || || || |||||||| || | || ||| || || | || || |||| Sbjct 1093133 ATGGTCTGCTCGCGCTCATCATT-GCCGCCAC-CCATGCCGGCGCCACGCTGGCGACCCA 1093190 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 | |||||||||||||||||||||| || || ||| Sbjct 1093191 CAGCATCAATCTCATCAATGAAGATGATGCAGGGT 1093225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971574175240