Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq35 113 5e-20
seq8 104 3e-17
>seq35
Length=1396082
Score = 113 bits (124), Expect = 5e-20
Identities = 116/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| || ||||| |||||||| || ||||| ||||||||| |||||| ||||| || ||
Sbjct 1268972 GTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGTTAGGCCGGGCATCAGGCC 1268913
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|| ||||| | ||| |||| ||| || || ||| ||| |||||||||||||||
Sbjct 1268912 GCGTTTCTTGAGCCAGAAAATGCTGCAAAACGAGCCGCTGAAAAAGATACCCTCCACAGC 1268853
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436
||| || || | || ||||| | ||||||||
Sbjct 1268852 CGCGAAGGCTACCAGCCGCTCCGGGAAGGAGC 1268821
>seq8
Length=2307048
Score = 104 bits (114), Expect = 3e-17
Identities = 154/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| || ||||| |||||||| || ||||| | |||||| | || || || || |||
Sbjct 1093013 CGGTCGAAGCGGCCTGGACGCAGCAGCGCCTGATCAAGCACGTCGGGTCGGTTGGTGGCG 1093072
Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
|| | |||| || ||| || | ||||| || ||||| || |||| ||| ||||||
Sbjct 1093073 GCCAGCACAATAACACCCGTGTTGCCCTCAAAGCCGTCCATTTCCGTCAGAAGCTGGTTA 1093132
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369
|| || || || || |||||||| || | || ||| || || | || || ||||
Sbjct 1093133 ATGGTCTGCTCGCGCTCATCATT-GCCGCCAC-CCATGCCGGCGCCACGCTGGCGACCCA 1093190
Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGT 9404
| |||||||||||||||||||||| || || |||
Sbjct 1093191 CAGCATCAATCTCATCAATGAAGATGATGCAGGGT 1093225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589971574175240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |