Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq10 194 2e-44 >seq10 Length=2191866 Score = 194 bits (214), Expect = 2e-44 Identities = 207/271 (76%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 || || |||||| | || || || | |||||||| || ||||||||||||| || | Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| ||| ||| | | ||||| ||| | || ||| |||| |||||||||||||| Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCATCGCTGCTCC 2092254 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || ||||||||||| || |||||||| || | ||||| || | ||||||||||| Sbjct 2092253 GCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAA 2092194 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 ||||||| | ||||| |||||||| |||| ||||| || || || || ||||| || || Sbjct 2092193 CATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAAT 2092134 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTG 180017 |||||||| || || || || |||||| || Sbjct 2092133 TTGGGAAGCTGCTTCTCTAGATGAGTGGTTG 2092103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610387254920040