Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq10 214 2e-50 seq65 84.2 3e-11 >seq10 Length=2191866 Score = 214 bits (236), Expect = 2e-50 Identities = 212/272 (78%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || |||||| | || |||||| | |||||||| || ||||||||||||| ||| | Sbjct 2092373 TTTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAAT 2092314 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| ||| ||| | | ||||| ||| || || ||| |||| ||| ||||||||| Sbjct 2092313 CATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCATCGCTGCTC 2092255 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || |||||||| || || |||||||| || | ||||| || | |||||||||| Sbjct 2092254 CGCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACA 2092195 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 |||||||| | ||||| ||||| || ||||||| ||||| || || || ||||| || | Sbjct 2092194 ACATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAA 2092135 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTG 168132 | |||||||| || || || |||||||||||| Sbjct 2092134 TTTGGGAAGCTGCTTCTCTAGATGAGTGGTTG 2092103 >seq65 Length=794414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 168562 GCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 168617 || |||||||||||||| |||||| | ||||||||||||||||||||||||||||| Sbjct 544456 GCTGCTCATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTC 544511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574464616669080