Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq10 187 3e-42 >seq10 Length=2191866 Score = 187 bits (206), Expect = 3e-42 Identities = 190/248 (77%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 168512 ACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACA 168571 ||| | ||| | ||||| | |||||||||||||| | |||||||||||| | | || Sbjct 2092351 ACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATCATGATCCCATGTCTTCTTACT 2092292 Query 168572 GCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATC 168631 ||| || || || || | || || || ||||| || || || || ||||| || || Sbjct 2092291 GCAACATCAGTATTTATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATT 2092232 Query 168632 AGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTT 168691 | ||||| || ||||| |||| | ||||| |||||||||||| ||||||| |||||| Sbjct 2092231 CGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAACATCATCACAGGTGCTGTTGTT 2092172 Query 168692 CCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGAT 168751 ||| |||| ||||| ||||| || || |||||||||||||||||||| ||| | | ||| Sbjct 2092171 CCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAATTTGGGAAGCTGCTTCTCTAGAT 2092112 Query 168752 GAGTGGTT 168759 |||||||| Sbjct 2092111 GAGTGGTT 2092104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564432773544480