Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq10 150 2e-31 >seq10 Length=2191866 Score = 150 bits (166), Expect = 2e-31 Identities = 186/252 (74%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || |||||||| || || ||||| ||||| | |||||| || ||| Sbjct 2092122 GCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTTAGAAGTTGGAACAACAGCA 2092181 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || | ||||||||||| || || | |||||||| | ||||| ||||| ||||| || Sbjct 2092182 CCTGTGATGATGTTGTTACCATAAAGAAGAGAACCTGAAACTGGTTCACGAATACCATCG 2092241 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 || || ||||| || ||| | | ||| || ||||| || || || || |||| ||| || Sbjct 2092242 ATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATACTGA-TGTTGCAGTAAGAAG 2092300 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 | ||| ||||| | || |||||||| | || | ||||| | ||| || |||| Sbjct 2092301 ACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGCGGTTCTCAGTTGAAGTGAT 2092360 Query 84944 CCAATCACAGAA 84955 ||| ||||| || Sbjct 2092361 CCACTCACAAAA 2092372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571264666709080