Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq10 158 4e-34 >seq10 Length=2191866 Score = 158 bits (174), Expect = 4e-34 Identities = 198/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 26166 CAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 26225 ||||||||| || || | ||||||||||| ||||||||||| || || ||||| ||||| Sbjct 2092103 CAACCACTCATCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTT 2092162 Query 26226 AGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 26285 ||| | || || | || |||| |||||||||||| ||||| || | | ||||| || Sbjct 2092163 AGAAGTTGGAACAACAGCACCTGTGATGATGTTGTTACCATAAAGAAGAGAACCTGAAAC 2092222 Query 26286 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGC 26345 || |||||||||||||| || || || || || ||||| | || || || | |||| | Sbjct 2092223 TGGTTCACGAATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATAC 2092282 Query 26346 TGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 26405 || ||| || | ||| |||||||| | ||| || ||||| || | || ||||| Sbjct 2092283 TGATGTTGCAGTAAGAAGACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGCG 2092342 Query 26406 GTTGTTTGTACTTGTAACCCAGTCACATAAAC 26437 ||| | || || | ||| ||||| |||| Sbjct 2092343 GTTCTCAGTTGAAGTGATCCACTCACAAAAAC 2092374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151991342040076