Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq35 107 4e-18 >seq35 Length=1396082 Score = 107 bits (118), Expect = 4e-18 Identities = 123/165 (75%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || ||||||||||||||| | ||| || || |||||| || | | | | ||| || Sbjct 1360636 CTCCATGAACAGGTCCGGAATCCAAAGGCCGTAGAACAGATCACGCGCGCGCGCCTCCTC 1360695 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || || ||||||||||| | ||| || |||| |||||| ||||| ||||| || Sbjct 1360696 CTTGCCGTGATTCTTGCGCAGATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGAT 1360755 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCAC 213979 ||||||||| ||||||||| | ||| ||||||||||||||| Sbjct 1360756 GTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1360800 Score = 105 bits (116), Expect = 1e-17 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 ||||||||| |||||| ||||| | ||||| || ||||| ||| |||||| |||| | Sbjct 1268997 CATAGAGCAGGCAGGCGAAGTCGCAGTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTG 1268938 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAA-GAG 48238 ||||| || || ||||| | || | | ||||||||||||| ||| || ||| ||| Sbjct 1268937 AGAAGGTTAGGCCGGGCATCAGGCCGCGTTTCTTGAGCCAGAAAA-TGCTGCAAAACGAG 1268879 Query 48239 CCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 || ||| ||||| |||||||| |||||||| || Sbjct 1268878 CCGCTGAAAAAGATACCCTCCACAGCCGCGAAGGC 1268844 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||||| ||| || ||||||||||| | || ||||||||| ||||| ||||| | || Sbjct 1358579 GTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGGACGTCGA 1358638 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 ||||||||||||||| || |||| ||| ||||||| || ||||| | ||||| || Sbjct 1358639 GGCTGTGGGCATGGGGGCAACCAAGAGGCTGTTCCGGACGCCGTGACGGGCGATGCGGTC 1358698 Query 213068 CCGAAGCTCTGCCCAGTCCCATCT 213091 || || ||| |||||| || || Sbjct 1358699 ACGCAGAGCTGGCCAGTCGCACCT 1358722 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| || |||||||||||||| ||| || ||| |||||||||||||| ||| Sbjct 1360165 GTGTACTCAATAATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCTGG 1360224 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || || || |||| || |||||||| | |||||| || || ||||| | ||| Sbjct 1360225 TTGGATTTCTTGTTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCTGA 1360284 Query 213648 GACACCAGTAT 213658 | | |||| || Sbjct 1360285 GCCTCCAGGAT 1360295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931518233155840