Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq35 141 2e-28 seq8 89.7 1e-12 >seq35 Length=1396082 Score = 141 bits (156), Expect = 2e-28 Identities = 134/166 (81%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG-TTTGCGGC 25934 ||||||||||||||||| || ||||||||||| |||||||||||||| ||| ||||| | Sbjct 1268832 GAGCGGCTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCGTTTTGCAG- 1268890 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||| |||||||||||| | | | || | |||||||| || ||| || ||||| |||| Sbjct 1268891 CATTTTCTGGCTCAAG-AAACGCGGCCTGATGCCCGGCCTAACCTTCTCAAACGAACTCA 1268949 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 || | | |||||||| || ||| | || || |||||||||||||| Sbjct 1268950 TCTCCCGAGACGAGGGGCTGCACTGCGACTTCGCCTGCCTGCTCTA 1268995 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| |||||||| ||||| || | | || ||||| | | ||| |||||| Sbjct 1360636 CTCCATGAACAGGTCCGGAATCCAAAGGCCGTAGAACAGATCACGCGCGCGCGCCTCCTC 1360695 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||||| || || | ||||||||||||||| || | ||| || ||||| ||||| | Sbjct 1360696 CTTGCCGTGATTCTTGCGCAGATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGAT 1360755 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||| ||| | ||||| |||||| ||| ||||| ||||| Sbjct 1360756 GTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1360800 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 221076 TCCATAGACCCCTCTCT-TCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCT 221134 |||| |||||| | ||| | ||| | | | || ||||| |||||| || || || Sbjct 1358500 TCCAGAGACCCAT-TCTGTTCAGGTCGTGAAGCAAGTGCTGGTTCACAACAGTAAACTCG 1358558 Query 221135 CCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTG 221194 ||||| | ||| | || ||| | ||| || ||| | || || | || |||||||||| Sbjct 1358559 CCCGATAACACGCGCCGAACGTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTG 1358618 Query 221195 CCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCG 221250 ||||||||||| | ||| ||| ||||||||||| || |||| || ||||| || Sbjct 1358619 CCCAGGATCTGGGACGTCGAGGCTGTGGGCATGGGGGCAACCAAGAGGCTGTTCCG 1358674 >seq8 Length=2307048 Score = 89.7 bits (98), Expect = 1e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 || |||| || ||| |||| ||||||||||||||||| || ||| || ||||| ||| Sbjct 630925 GAGGAGCGGCGGTTTATCAAATACGTGTTGGCATTCTTCGCTGCCAGCGACGGTATCGTG 630984 Query 25633 AACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTT 25691 | ||||| |||| | | | |||| ||| ||||| || | | |||||| || Sbjct 630985 ATGGAGAACCTGTCGGCGCGGTTCATGTCGGAGGTGCAGGTGCCT-GAGGCCCGCGCATT 631043 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCA 25724 |||||| |||||||| ||||| ||||| ||||| Sbjct 631044 CTACGGCTTCCAGATTGCCATGGAAAACGTGCA 631076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830275189440