Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq35 141 2e-28
seq8 89.7 1e-12
>seq35
Length=1396082
Score = 141 bits (156), Expect = 2e-28
Identities = 134/166 (81%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG-TTTGCGGC 25934
||||||||||||||||| || ||||||||||| |||||||||||||| ||| ||||| |
Sbjct 1268832 GAGCGGCTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCGTTTTGCAG- 1268890
Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993
||| |||||||||||| | | | || | |||||||| || ||| || ||||| ||||
Sbjct 1268891 CATTTTCTGGCTCAAG-AAACGCGGCCTGATGCCCGGCCTAACCTTCTCAAACGAACTCA 1268949
Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039
|| | | |||||||| || ||| | || || ||||||||||||||
Sbjct 1268950 TCTCCCGAGACGAGGGGCTGCACTGCGACTTCGCCTGCCTGCTCTA 1268995
Score = 95.1 bits (104), Expect = 2e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096
|| |||||| |||||||| ||||| || | | || ||||| | | ||| ||||||
Sbjct 1360636 CTCCATGAACAGGTCCGGAATCCAAAGGCCGTAGAACAGATCACGCGCGCGCGCCTCCTC 1360695
Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156
| ||||| || || | ||||||||||||||| || | ||| || ||||| ||||| |
Sbjct 1360696 CTTGCCGTGATTCTTGCGCAGATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGAT 1360755
Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201
|||| ||| | ||||| |||||| ||| ||||| |||||
Sbjct 1360756 GTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1360800
Score = 86.0 bits (94), Expect = 1e-11
Identities = 126/176 (72%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 221076 TCCATAGACCCCTCTCT-TCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCT 221134
|||| |||||| | ||| | ||| | | | || ||||| |||||| || || ||
Sbjct 1358500 TCCAGAGACCCAT-TCTGTTCAGGTCGTGAAGCAAGTGCTGGTTCACAACAGTAAACTCG 1358558
Query 221135 CCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTG 221194
||||| | ||| | || ||| | ||| || ||| | || || | || ||||||||||
Sbjct 1358559 CCCGATAACACGCGCCGAACGTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTG 1358618
Query 221195 CCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCG 221250
||||||||||| | ||| ||| ||||||||||| || |||| || ||||| ||
Sbjct 1358619 CCCAGGATCTGGGACGTCGAGGCTGTGGGCATGGGGGCAACCAAGAGGCTGTTCCG 1358674
>seq8
Length=2307048
Score = 89.7 bits (98), Expect = 1e-12
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632
|| |||| || ||| |||| ||||||||||||||||| || ||| || ||||| |||
Sbjct 630925 GAGGAGCGGCGGTTTATCAAATACGTGTTGGCATTCTTCGCTGCCAGCGACGGTATCGTG 630984
Query 25633 AACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTT 25691
| ||||| |||| | | | |||| ||| ||||| || | | |||||| ||
Sbjct 630985 ATGGAGAACCTGTCGGCGCGGTTCATGTCGGAGGTGCAGGTGCCT-GAGGCCCGCGCATT 631043
Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCA 25724
|||||| |||||||| ||||| ||||| |||||
Sbjct 631044 CTACGGCTTCCAGATTGCCATGGAAAACGTGCA 631076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928830275189440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |