Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq10 183 3e-41
seq102 104 3e-17
>seq10
Length=2191866
Score = 183 bits (202), Expect = 3e-41
Identities = 203/268 (76%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935
|||||| | ||| |||| || || ||||||||||| | ||||||||||| || |
Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313
Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994
||||| || || | || |||| || || || || ||||| || ||| | | ||||||
Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCATCGCTGCTCC 2092254
Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054
|| || |||||||| || ||||||||||| || | ||||| || | ||||| |||||
Sbjct 2092253 GCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAA 2092194
Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114
||||||| | ||||||||| | || |||||||||||||||| ||||| |||||||| ||
Sbjct 2092193 CATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAAT 2092134
Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGG 161142
|||||||| || ||| || || |||
Sbjct 2092133 TTGGGAAGCTGCTTCTCTAGATGAGTGG 2092106
>seq102
Length=298891
Score = 104 bits (114), Expect = 3e-17
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400
||| | || ||||| || ||||| || ||| | || || ||||| ||||||||||||
Sbjct 97698 TACCTGCTGGACGCGGCCGAGGAGGCTGGTATGGACCTGCCGTACTCTTGCCGTGCAGGC 97757
Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460
||||| || || || || || | || || |||||||| ||||| ||||||||| |
Sbjct 97758 GCTTGCTCTAGCTGCGCCGGCAAGATTGTGTCGGGCACCGTGGACCAGAGCGACCAGAGC 97817
Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGT 158507
|||||||||||| | || || || |||| ||| | || || || ||
Sbjct 97818 TTCCTGGACGATAAGCAGATGGAGGCTGGCTTCGTGCTCACCTGCGT 97864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547738634603160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |