Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq10 183 3e-41 seq102 104 3e-17 >seq10 Length=2191866 Score = 183 bits (202), Expect = 3e-41 Identities = 203/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||| | ||| |||| || || ||||||||||| | ||||||||||| || | Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || || | || |||| || || || || ||||| || ||| | | |||||| Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCATCGCTGCTCC 2092254 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || |||||||| || ||||||||||| || | ||||| || | ||||| ||||| Sbjct 2092253 GCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAA 2092194 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 ||||||| | ||||||||| | || |||||||||||||||| ||||| |||||||| || Sbjct 2092193 CATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAAT 2092134 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGG 161142 |||||||| || ||| || || ||| Sbjct 2092133 TTGGGAAGCTGCTTCTCTAGATGAGTGG 2092106 >seq102 Length=298891 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||| | || ||||| || ||||| || ||| | || || ||||| |||||||||||| Sbjct 97698 TACCTGCTGGACGCGGCCGAGGAGGCTGGTATGGACCTGCCGTACTCTTGCCGTGCAGGC 97757 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 ||||| || || || || || | || || |||||||| ||||| ||||||||| | Sbjct 97758 GCTTGCTCTAGCTGCGCCGGCAAGATTGTGTCGGGCACCGTGGACCAGAGCGACCAGAGC 97817 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGT 158507 |||||||||||| | || || || |||| ||| | || || || || Sbjct 97818 TTCCTGGACGATAAGCAGATGGAGGCTGGCTTCGTGCTCACCTGCGT 97864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547738634603160