Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq10 176 6e-39
seq102 98.7 1e-15
seq28 84.2 3e-11
>seq10
Length=2191866
Score = 176 bits (194), Expect = 6e-39
Identities = 203/271 (75%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 103888 CAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTT 103947
|| ||||||||| ||||| || ||||||||||| || ||||| || || || || |||||
Sbjct 2092103 CAACCACTCATCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTT 2092162
Query 103948 GGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGAC 104007
|| | |||||||| ||||| | ||||||||||||||| || | || ||||| | ||
Sbjct 2092163 AGAAGTTGGAACAACAGCACCTGTGATGATGTTGTTACCATAAAGAAGAGAACCTGAAAC 2092222
Query 104008 GGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GC 104066
||||||||||| || ||||| || || || || || || | |||||| | ||| || |
Sbjct 2092223 TGGTTCACGAATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATAC 2092282
Query 104067 AGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGAC 104126
||| ||||| | | ||| ||||||||| | |||||||||||||| | || || |
Sbjct 2092283 TGAT-GTTGCAGTAAGAAGACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGC 2092341
Query 104127 GGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157
|||| | || || || | |||||| || ||
Sbjct 2092342 GGTTCTCAGTTGAAGTGATCCACTCACAAAA 2092372
>seq102
Length=298891
Score = 98.7 bits (108), Expect = 1e-15
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 102775 TTAGTAGAGTGATTCTTCTTGTTCTGTCAGGACTACCACATCCGAAGTTGGGTATGCCAC 102834
||||||||| || || || | ||||||| |||| |||||||| | ||| |||||
Sbjct 97922 TTAGTAGAGACCCTCCTCCTGGTTGGTCAGGATGACCAGGTCCGAAGTGGCGTAGGCCAC 97863
Query 102835 GCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCTTG 102894
|||||| || || || || || || | || | || ||||| ||| || || ||
Sbjct 97862 GCAGGTGAGCACGAAGCCAGCCTCCATCTGCTTATCGTCCAGGAAGCTCTGGTCGCTCTG 97803
Query 102895 ATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAGGA 102954
|| || || ||||| ||||||| || || || |||| || || || ||||| || ||
Sbjct 97802 GTCCACGGTGCCCGACACAATCTTGCCGGCGCAGCTAGAGCAAGCGCCTGCACGGCAAGA 97743
Query 102955 ATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAG 102993
|| ||||| || | ||| || || || || ||||| ||
Sbjct 97742 GTACGGCAGGTCCATACCAGCCTCCTCGGCCGCGTCCAG 97704
>seq28
Length=1566407
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/178 (71%), Gaps = 1/178 (1%)
Strand=Plus/Plus
Query 102789 CTTCTTGTTCTGTCAGGACTACCACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAA 102848
|| || |||| ||||||| || | |||||||||| ||| || ||||||||||||||
Sbjct 192480 CTCCTGGTTC-GTCAGGATAACGAGGTCCGAAGTTGCGTAGGCAACGCAGGTCAGAACGT 192538
Query 102849 AACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCG 102908
| || || || | || | ||||||||| ||| || || || || || || || |
Sbjct 192539 AGCCAGCCTCCATCTGCTTGTCATCCAGGAAGCTCTGGTCGCTCTGGTCCACGGTGCCGG 192598
Query 102909 ATTCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATC 102966
| ||| ||| || || || | || || |||||||| || || || || ||||| ||
Sbjct 192599 ACACAACCTTGCCGGCGCAGCTGGAGCAGGCACCAGCGCGGCACGAGTATGGCAGGTC 192656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633503693431080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |