Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq10 176 6e-39 seq102 98.7 1e-15 seq28 84.2 3e-11 >seq10 Length=2191866 Score = 176 bits (194), Expect = 6e-39 Identities = 203/271 (75%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 103888 CAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTT 103947 || ||||||||| ||||| || ||||||||||| || ||||| || || || || ||||| Sbjct 2092103 CAACCACTCATCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTT 2092162 Query 103948 GGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGAC 104007 || | |||||||| ||||| | ||||||||||||||| || | || ||||| | || Sbjct 2092163 AGAAGTTGGAACAACAGCACCTGTGATGATGTTGTTACCATAAAGAAGAGAACCTGAAAC 2092222 Query 104008 GGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GC 104066 ||||||||||| || ||||| || || || || || || | |||||| | ||| || | Sbjct 2092223 TGGTTCACGAATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATAC 2092282 Query 104067 AGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGAC 104126 ||| ||||| | | ||| ||||||||| | |||||||||||||| | || || | Sbjct 2092283 TGAT-GTTGCAGTAAGAAGACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGC 2092341 Query 104127 GGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157 |||| | || || || | |||||| || || Sbjct 2092342 GGTTCTCAGTTGAAGTGATCCACTCACAAAA 2092372 >seq102 Length=298891 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 102775 TTAGTAGAGTGATTCTTCTTGTTCTGTCAGGACTACCACATCCGAAGTTGGGTATGCCAC 102834 ||||||||| || || || | ||||||| |||| |||||||| | ||| ||||| Sbjct 97922 TTAGTAGAGACCCTCCTCCTGGTTGGTCAGGATGACCAGGTCCGAAGTGGCGTAGGCCAC 97863 Query 102835 GCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCTTG 102894 |||||| || || || || || || | || | || ||||| ||| || || || Sbjct 97862 GCAGGTGAGCACGAAGCCAGCCTCCATCTGCTTATCGTCCAGGAAGCTCTGGTCGCTCTG 97803 Query 102895 ATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAGGA 102954 || || || ||||| ||||||| || || || |||| || || || ||||| || || Sbjct 97802 GTCCACGGTGCCCGACACAATCTTGCCGGCGCAGCTAGAGCAAGCGCCTGCACGGCAAGA 97743 Query 102955 ATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAG 102993 || ||||| || | ||| || || || || ||||| || Sbjct 97742 GTACGGCAGGTCCATACCAGCCTCCTCGGCCGCGTCCAG 97704 >seq28 Length=1566407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/178 (71%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 102789 CTTCTTGTTCTGTCAGGACTACCACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAA 102848 || || |||| ||||||| || | |||||||||| ||| || |||||||||||||| Sbjct 192480 CTCCTGGTTC-GTCAGGATAACGAGGTCCGAAGTTGCGTAGGCAACGCAGGTCAGAACGT 192538 Query 102849 AACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCG 102908 | || || || | || | ||||||||| ||| || || || || || || || | Sbjct 192539 AGCCAGCCTCCATCTGCTTGTCATCCAGGAAGCTCTGGTCGCTCTGGTCCACGGTGCCGG 192598 Query 102909 ATTCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATC 102966 | ||| ||| || || || | || || |||||||| || || || || ||||| || Sbjct 192599 ACACAACCTTGCCGGCGCAGCTGGAGCAGGCACCAGCGCGGCACGAGTATGGCAGGTC 192656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633503693431080