Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq10 163 8e-36 >seq10 Length=2191866 Score = 163 bits (180), Expect = 8e-36 Identities = 198/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 22184 CAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATT 22243 || ||| ||||| || | |||||||||||||||||||||||| || || ||||| || || Sbjct 2092103 CAACCACTCATCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTT 2092162 Query 22244 ACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGAC 22303 | | ||||| || || |||| ||||||||||||||||| | || || || | || Sbjct 2092163 AGAAGTTGGAACAACAGCACCTGTGATGATGTTGTTACCATAAAGAAGAGAACCTGAAAC 2092222 Query 22304 GGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACA 22363 ||||| || || ||||||||||| || || || || | | || ||||| ||||| Sbjct 2092223 TGGTTCACGAATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATAC 2092282 Query 22364 AGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACG 22423 | ||| || | ||| || || || ||||| | || |||||||| || | ||||| || Sbjct 2092283 TGATGTTGCAGTAAGAAGACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGCG 2092342 Query 22424 GTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 ||| | ||| || |||| ||| |||||| Sbjct 2092343 GTTCTCAGTTGAAGTGATCCACTCACAAAA 2092372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146205827988780