Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq10 185 1e-41 >seq10 Length=2191866 Score = 185 bits (204), Expect = 1e-41 Identities = 205/271 (76%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 124762 CAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTT 124821 |||||| ||||| | || || |||||||| ||||||||||| || || ||||||||||| Sbjct 2092103 CAACCACTCATCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTT 2092162 Query 124822 TGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AGAACCCGCTA 124880 || | ||||||||| ||||| | |||||||||||||||||| ||||| |||||| | | Sbjct 2092163 AGAAGTTGGAACAACAGCACCTGTGATGATGTTGTTACCATA-AAGAAGAGAACCTGAAA 2092221 Query 124881 CTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAAC 124940 ||||||| | || || ||||| || || || || || || || || || | ||| || Sbjct 2092222 CTGGTTCACGAATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATA 2092281 Query 124941 ATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTC 125000 || || ||| || || | ||||| ||||| | ||||| |||||||| | |||| | Sbjct 2092282 CTGATGTTGCAGTAAGAAGACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGC 2092341 Query 125001 TGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||| | ||||| || | ||||||||| || Sbjct 2092342 GGTTCTCAGTTGAAGTGATCCACTCACAAAA 2092372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578989345912520