Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq10 199 5e-46 >seq10 Length=2191866 Score = 199 bits (220), Expect = 5e-46 Identities = 209/272 (77%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 27447 CAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATT 27506 |||||||||||| || || || |||||||| ||||||||||| || || ||||| || || Sbjct 2092103 CAACCACTCATCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTT 2092162 Query 27507 TGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAAC 27566 ||| |||| ||||| ||||| | ||||||||||| ||||| | ||| ||||| | ||| Sbjct 2092163 AGAAGTTGGAACAACAGCACCTGTGATGATGTTGTTACCATAAAGAAGAGAACCTGAAAC 2092222 Query 27567 GGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GC 27625 |||||||||||||| || || || || || || || |||||||| |||| || || | Sbjct 2092223 TGGTTCACGAATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATAC 2092282 Query 27626 AGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAAC 27685 || ||||| | | || ||||||||| | ||||||||||||||| | || | | Sbjct 2092283 TGA-TGTTGCAGTAAGAAGACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGC 2092341 Query 27686 GGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 |||| | |||||| || | ||||||||| ||| Sbjct 2092342 GGTTCTCAGTTGAAGTGATCCACTCACAAAAA 2092373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665483993331320