Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq10 167 3e-36 seq65 84.2 2e-11 >seq10 Length=2191866 Score = 167 bits (184), Expect = 3e-36 Identities = 183/241 (76%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 165796 AACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACT 165855 ||||| || || |||||||||| ||| | ||||| ||| ||| | | ||||| Sbjct 2092345 AACCGCCTTTACATCGGTTGGTTCGGTGTAATCATGATCCCATGTCTTCTTACTGCAAC- 2092287 Query 165856 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 165914 ||| | || ||| |||| |||||||||||||| || || |||||||| || || ||||| Sbjct 2092286 ATCAGTATTTATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATTCGTGA 2092227 Query 165915 ACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 165974 ||| || | |||||||| | |||||||||||||||||| | ||||| |||||||| | Sbjct 2092226 ACCAGTTTCAGGTTCTCTTCTTTATGGTAACAACATCATCACAGGTGCTGTTGTTCCAAC 2092167 Query 165975 TTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATG 166034 ||| ||||| || || || || ||||| || || |||||||| || || || || || || Sbjct 2092166 TTCTAACGCTATCGGCCTGCATTTCTACCCAATTTGGGAAGCTGCTTCTCTAGATGAGTG 2092107 Query 166035 G 166035 | Sbjct 2092106 G 2092106 >seq65 Length=794414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 166468 GCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 166523 || |||||||||||||| |||||| | ||||||||||||||||||||||||||||| Sbjct 544456 GCTGCTCATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTC 544511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561239223484400