Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4 203 4e-47 seq14 143 4e-29 seq67 107 3e-18 seq37 107 3e-18 seq35 102 1e-16 seq48 89.7 7e-13 >seq4 Length=2765396 Score = 203 bits (224), Expect = 4e-47 Identities = 310/439 (71%), Gaps = 2/439 (0%) Strand=Plus/Plus Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138 || || || || || ||||| || |||||||| || | ||||| || | ||||| || Sbjct 1734258 ACCGCTTGCGAGCGCGCCAAGCGCACTCTCTCCTCGGCTGCTCAGACTACCATTGAGCTT 1734317 Query 196139 GATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198 || || | ||||| || ||||||||| || | |||||||| || |||||||| ||| Sbjct 1734318 GACTCTCTCTTTGAGGGCATTGACTTCGCCACCTCGATTACCCGCGCCCGTTTTGAGGAG 1734377 Query 196199 TTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT-CGTGACGC 196257 | | ||| |||| | ||||| ||||| || ||||| |||| | | ||||| || Sbjct 1734378 CTTTGCATGGATCTGTTCCGCAAGTGCATGGACCCAGTTGAG-AAGTGCCTGCGTGATGC 1734436 Query 196258 AAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCC 196317 ||||||||| ||| | || | || | || || || || || || ||||||||||| Sbjct 1734437 AAAGATGGACAAGAGCACTGTGCACGACGTCGTGCTGGTCGGCGGCTCGACCCGTATTCC 1734496 Query 196318 GAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAA 196377 ||| |||| ||| |||| ||||||||| || || || ||||| |||| || Sbjct 1734497 CAAGGTTCAGCAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCGATTAA 1734556 Query 196378 CCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGA 196437 ||| ||||| || ||||| || |||||||| || ||||| ||||| ||| | || | | Sbjct 1734557 CCCCGATGAGGCCGTTGCATACGGTGCGGCAGTGCAGGCAGCTATCCTCACGGGCGAGGG 1734616 Query 196438 CAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGA 196497 | || || || ||||| ||||| || ||||| | ||| | ||| ||||||| || Sbjct 1734617 TGGCGAGAAGGTGCAGGATCTCCTGCTGCTGGATGTCACCCCCCTCTCCTTGGGTCTGGA 1734676 Query 196498 AACAGCGGGTGGTGTTATG 196516 || || || ||||| ||| Sbjct 1734677 GACTGCTGGCGGTGTCATG 1734695 >seq14 Length=2072552 Score = 143 bits (158), Expect = 4e-29 Identities = 230/327 (70%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||||||| ||| | | | | || || ||||| || | || || || ||| Sbjct 31279 AAGATGAAGGAGACTGCCGAAGCATACCTTGGCAAGACTGTTAAGCACGCCGTCGTCACT 31338 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| ||| | || || ||||| || ||||| |||| | ||| | Sbjct 31339 GTTCCAGCGTACTTCAACGATGCTCAGCGCCAGGCTACTAAGGATGCTGGGACAATTTCT 31398 Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || || ||| || | || |||||||| || || || || |||||||| ||||| || Sbjct 31399 GGCCTGAA-TGTGGTTCGCATCATCAATGAGCCGACGGCTGCCGCAATTGCCTATGGCCT 31457 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 |||||| |||| | || || ||| | || | |||||||| || || ||||| || Sbjct 31458 TGACAAG---AAGGGTGGCGAGAAGAATATTCTGGTGTTTGATCTGGGCGGCGGTACTTT 31514 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||||| ||| |||||| || || ||| | ||||| || | | || || || Sbjct 31515 CGATGTGTCAATTCTCACCATCGACAACGGTGTTTTCGAGGTCATTTCCACCAACGGCGA 31574 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || || || |||||||| Sbjct 31575 CACCCACCTTGGAGGCGAGGATTTCGA 31601 >seq67 Length=753185 Score = 107 bits (118), Expect = 3e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || |||||||| || |||||||| ||||| ||||| ||||| || Sbjct 69290 ATGCAGATCTTCGTAAAGACCCTTACGGGTAAAACTATTACCCTGGAGGTCGAGTCTTCG 69231 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||||||||| ||| | || |||||||| || || |||||||| Sbjct 69230 GACACAATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGG 69187 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||| || || ||||| || ||||| || |||||||| ||||||||||||| Sbjct 68652 GTATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTGGAGGTTGAGTCGT 68593 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 | || || || || ||| | || |||||||| || || ||||| || Sbjct 68592 CGGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 68547 >seq37 Length=1295102 Score = 107 bits (118), Expect = 3e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| ||||| || || || ||||||||||||||||| ||||| || Sbjct 457877 ATGCAAATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCG 457936 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 457937 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 457980 >seq35 Length=1396082 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| |||||||| || || || || ||||| ||||| ||||| || Sbjct 1305122 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCG 1305181 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| |||| ||||||||||| || ||||| || Sbjct 1305182 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGG 1305225 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| |||||||| || || || || ||||| ||||| ||||| || Sbjct 1305474 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCG 1305533 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| |||| ||||||||||| || ||||| || Sbjct 1305534 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGG 1305577 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| |||||||| || || || || ||||| ||||| ||||| || Sbjct 1305845 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCG 1305904 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| |||| ||||||||||| || ||||| || Sbjct 1305905 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGG 1305948 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || |||||||| || || ||||| ||||| ||||| ||||| || Sbjct 1304440 ATGCAGATCTTTGTCAAGACCCTTACGGGGAAGACTATTACCCTTGAGGTCGAGTCCTCG 1304499 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 || || || || || | |||||||||||||| || ||||| || Sbjct 1304500 GATACTATTGAGAATGTAAAAGCCAAGATTCAGGACAAGGAGGG 1304543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || || ||||| || || ||||||||||| || ||||| || ||||| || Sbjct 1304995 AGGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCG 1305054 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || || || || |||||| |||| |||||| || | ||||| || || | || || Sbjct 1305055 CACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCG 1305114 Query 172083 GGGTGG 172088 ||||| Sbjct 1305115 CGGTGG 1305120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || || ||||| || || ||||||||||| || ||||| || ||||| || Sbjct 1305347 AGGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCG 1305406 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || || || || |||||| |||| |||||| || | ||||| || || | || || Sbjct 1305407 CACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCG 1305466 Query 172083 GGGTGG 172088 ||||| Sbjct 1305467 TGGTGG 1305472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || || ||||| || || ||||||||||| || ||||| || ||||| || Sbjct 1305718 AGGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCG 1305777 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || || || || |||||| |||| |||||| || | ||||| || || | || || Sbjct 1305778 CACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCG 1305837 Query 172083 GGGTGG 172088 ||||| Sbjct 1305838 TGGTGG 1305843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || || ||||| || || ||||||||||| || ||||| || ||||| || Sbjct 1306089 AGGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCG 1306148 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || || || || |||||| |||| |||||| || | ||||| || || | || || Sbjct 1306149 CACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCG 1306208 Query 172083 GGGTGG 172088 ||||| Sbjct 1306209 CGGTGG 1306214 >seq48 Length=1037572 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||||||||| ||||| || || || || ||||| || ||||| |||||||| Sbjct 716300 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACGCTGGAGGTGGAGTCGTCT 716359 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || ||| | || || || ||||| || || || || Sbjct 716360 GACACGATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGG 716403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657852112676720