Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq4 203 4e-47
seq14 143 4e-29
seq67 107 3e-18
seq37 107 3e-18
seq35 102 1e-16
seq48 89.7 7e-13
>seq4
Length=2765396
Score = 203 bits (224), Expect = 4e-47
Identities = 310/439 (71%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138
|| || || || || ||||| || |||||||| || | ||||| || | ||||| ||
Sbjct 1734258 ACCGCTTGCGAGCGCGCCAAGCGCACTCTCTCCTCGGCTGCTCAGACTACCATTGAGCTT 1734317
Query 196139 GATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198
|| || | ||||| || ||||||||| || | |||||||| || |||||||| |||
Sbjct 1734318 GACTCTCTCTTTGAGGGCATTGACTTCGCCACCTCGATTACCCGCGCCCGTTTTGAGGAG 1734377
Query 196199 TTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT-CGTGACGC 196257
| | ||| |||| | ||||| ||||| || ||||| |||| | | ||||| ||
Sbjct 1734378 CTTTGCATGGATCTGTTCCGCAAGTGCATGGACCCAGTTGAG-AAGTGCCTGCGTGATGC 1734436
Query 196258 AAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCC 196317
||||||||| ||| | || | || | || || || || || || |||||||||||
Sbjct 1734437 AAAGATGGACAAGAGCACTGTGCACGACGTCGTGCTGGTCGGCGGCTCGACCCGTATTCC 1734496
Query 196318 GAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAA 196377
||| |||| ||| |||| ||||||||| || || || ||||| |||| ||
Sbjct 1734497 CAAGGTTCAGCAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCGATTAA 1734556
Query 196378 CCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGA 196437
||| ||||| || ||||| || |||||||| || ||||| ||||| ||| | || | |
Sbjct 1734557 CCCCGATGAGGCCGTTGCATACGGTGCGGCAGTGCAGGCAGCTATCCTCACGGGCGAGGG 1734616
Query 196438 CAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGA 196497
| || || || ||||| ||||| || ||||| | ||| | ||| ||||||| ||
Sbjct 1734617 TGGCGAGAAGGTGCAGGATCTCCTGCTGCTGGATGTCACCCCCCTCTCCTTGGGTCTGGA 1734676
Query 196498 AACAGCGGGTGGTGTTATG 196516
|| || || ||||| |||
Sbjct 1734677 GACTGCTGGCGGTGTCATG 1734695
>seq14
Length=2072552
Score = 143 bits (158), Expect = 4e-29
Identities = 230/327 (70%), Gaps = 5/327 (2%)
Strand=Plus/Plus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
||||||||||||||||| ||| | | | | || || ||||| || | || || || |||
Sbjct 31279 AAGATGAAGGAGACTGCCGAAGCATACCTTGGCAAGACTGTTAAGCACGCCGTCGTCACT 31338
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| || || ||||||| ||| | || || ||||| || ||||| |||| | ||| |
Sbjct 31339 GTTCCAGCGTACTTCAACGATGCTCAGCGCCAGGCTACTAAGGATGCTGGGACAATTTCT 31398
Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840
|| || || ||| || | || |||||||| || || || || |||||||| ||||| ||
Sbjct 31399 GGCCTGAA-TGTGGTTCGCATCATCAATGAGCCGACGGCTGCCGCAATTGCCTATGGCCT 31457
Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900
|||||| |||| | || || ||| | || | |||||||| || || ||||| ||
Sbjct 31458 TGACAAG---AAGGGTGGCGAGAAGAATATTCTGGTGTTTGATCTGGGCGGCGGTACTTT 31514
Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960
||||| ||| |||||| || || ||| | ||||| || | | || || ||
Sbjct 31515 CGATGTGTCAATTCTCACCATCGACAACGGTGTTTTCGAGGTCATTTCCACCAACGGCGA 31574
Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987
|| || || || || || ||||||||
Sbjct 31575 CACCCACCTTGGAGGCGAGGATTTCGA 31601
>seq67
Length=753185
Score = 107 bits (118), Expect = 3e-18
Identities = 86/104 (83%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || |||||||| || |||||||| ||||| ||||| ||||| ||
Sbjct 69290 ATGCAGATCTTCGTAAAGACCCTTACGGGTAAAACTATTACCCTGGAGGTCGAGTCTTCG 69231
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||||||||| ||| | || |||||||| || || ||||||||
Sbjct 69230 GACACAATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGG 69187
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| ||||| || || ||||| || ||||| || |||||||| |||||||||||||
Sbjct 68652 GTATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTGGAGGTTGAGTCGT 68593
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
| || || || || ||| | || |||||||| || || ||||| ||
Sbjct 68592 CGGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 68547
>seq37
Length=1295102
Score = 107 bits (118), Expect = 3e-18
Identities = 86/104 (83%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||| ||||| ||||| || || || ||||||||||||||||| ||||| ||
Sbjct 457877 ATGCAAATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCG 457936
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||| ||||| || | || ||||||||||| || ||||| ||
Sbjct 457937 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 457980
>seq35
Length=1396082
Score = 102 bits (112), Expect = 1e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| ||||| |||||||| || || || || ||||| ||||| ||||| ||
Sbjct 1305122 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCG 1305181
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||| ||||| ||| |||| ||||||||||| || ||||| ||
Sbjct 1305182 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGG 1305225
Score = 102 bits (112), Expect = 1e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| ||||| |||||||| || || || || ||||| ||||| ||||| ||
Sbjct 1305474 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCG 1305533
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||| ||||| ||| |||| ||||||||||| || ||||| ||
Sbjct 1305534 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGG 1305577
Score = 102 bits (112), Expect = 1e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| ||||| |||||||| || || || || ||||| ||||| ||||| ||
Sbjct 1305845 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCG 1305904
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||| ||||| ||| |||| ||||||||||| || ||||| ||
Sbjct 1305905 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGG 1305948
Score = 93.3 bits (102), Expect = 6e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| |||||||| || |||||||| || || ||||| ||||| ||||| ||||| ||
Sbjct 1304440 ATGCAGATCTTTGTCAAGACCCTTACGGGGAAGACTATTACCCTTGAGGTCGAGTCCTCG 1304499
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
|| || || || || | |||||||||||||| || ||||| ||
Sbjct 1304500 GATACTATTGAGAATGTAAAAGCCAAGATTCAGGACAAGGAGGG 1304543
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||||||||| || || ||||| || || ||||||||||| || ||||| || ||||| ||
Sbjct 1304995 AGGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCG 1305054
Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082
|| || || || |||||| |||| |||||| || | ||||| || || | || ||
Sbjct 1305055 CACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCG 1305114
Query 172083 GGGTGG 172088
|||||
Sbjct 1305115 CGGTGG 1305120
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||||||||| || || ||||| || || ||||||||||| || ||||| || ||||| ||
Sbjct 1305347 AGGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCG 1305406
Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082
|| || || || |||||| |||| |||||| || | ||||| || || | || ||
Sbjct 1305407 CACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCG 1305466
Query 172083 GGGTGG 172088
|||||
Sbjct 1305467 TGGTGG 1305472
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||||||||| || || ||||| || || ||||||||||| || ||||| || ||||| ||
Sbjct 1305718 AGGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCG 1305777
Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082
|| || || || |||||| |||| |||||| || | ||||| || || | || ||
Sbjct 1305778 CACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCG 1305837
Query 172083 GGGTGG 172088
|||||
Sbjct 1305838 TGGTGG 1305843
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||||||||| || || ||||| || || ||||||||||| || ||||| || ||||| ||
Sbjct 1306089 AGGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCG 1306148
Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082
|| || || || |||||| |||| |||||| || | ||||| || || | || ||
Sbjct 1306149 CACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCG 1306208
Query 172083 GGGTGG 172088
|||||
Sbjct 1306209 CGGTGG 1306214
>seq48
Length=1037572
Score = 89.7 bits (98), Expect = 7e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||||||||| ||||| || || || || ||||| || ||||| ||||||||
Sbjct 716300 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACGCTGGAGGTGGAGTCGTCT 716359
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||| || || ||| | || || || ||||| || || || ||
Sbjct 716360 GACACGATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGG 716403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657852112676720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |