Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq10 179 1e-40 >seq10 Length=2191866 Score = 179 bits (198), Expect = 1e-40 Identities = 196/258 (76%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||| | ||||| ||| | ||||| ||||| | || ||||| Sbjct 2092381 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTC 2092322 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| | ||||| || ||||| || |||| || | | || ||||| |||||||||| Sbjct 2092321 GGTGTAATCATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCAT 2092263 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||| || || |||||||| ||||| ||||||||||| || || || |||||||| || Sbjct 2092262 CGCTGCTCCGCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTA 2092203 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| |||||||||||| | ||||| || || || | |||||| || || || ||||| Sbjct 2092202 TGGTAACAACATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTT 2092143 Query 42519 GTATTCGATCTGGGAAGC 42536 || | || |||||||| Sbjct 2092142 CTACCCAATTTGGGAAGC 2092125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143530667730548