Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq10 161 3e-35 >seq10 Length=2191866 Score = 161 bits (178), Expect = 3e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 41249 CCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGA 41308 |||||| || || | | |||||||| |||||||||||||| || ||||| |||||||| Sbjct 2092106 CCACTCATCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAATGCAGGCCGATAGCGTTAGA 2092165 Query 41309 GCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGG 41368 | ||||| ||||| || | || || ||||| || || | | || || ||||| || Sbjct 2092166 AGTTGGAACAACAGCACCTGTGATGATGTTGTTACCATAAAGAAGAGAACCTGAAACTGG 2092225 Query 41369 CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGT 41428 ||||| || ||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 2092226 TTCACGAATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATAAATACTGA 2092285 Query 41429 GGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTT 41488 || ||||| || | ||| ||||| | ||||| |||||||| | ||| |||||||| Sbjct 2092286 TGTTGCAGTAAGAAGACATGGGATCATGATTACACCGAACCAACCGATGTAAAGGCGGTT 2092345 Query 41489 GTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || ||||| ||| | |||||| Sbjct 2092346 CTCAGTTGAAGTGATCCACTCACAAAA 2092372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143700265211034