Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_021221.1 Length=45781 Score E Sequences producing significant alignments: (Bits) Value seq36 111 5e-20 >seq36 Length=1374688 Score = 111 bits (122), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 1068 GTAGCGCGGCGGACGTGATCGTGCCCGCCCAAGGGCGAGCGCTGATCCCGACCGACCTGT 1127 ||||||||| |||| | || | ||||| | ||| ||||| || ||| ||| | | Sbjct 1183652 GTAGCGCGGAGGACACGGTCATCCCCGCTCGCGGGAAGGCGCTCGTCAAGACGGACATCT 1183711 Query 1128 CCTTC-GAGTTCCCGAAGGGGGTCTATGGGCGTCTCGCTCCTCGTTCGGGGCTGGCGGTG 1186 || || | |||||| ||||| |||||| ||| | ||||| |||||||| ||||| | Sbjct 1183712 CCATCCGCGTTCCC-AAGGGCACCTATGGACGTGTTGCTCCGCGTTCGGGCCTGGCCGCC 1183770 Query 1187 AAACACTTTATCGATGTGGGGGCGGGCGTGATAGACGGCGACTATCGAGGCATCGTGTGC 1246 || |||| |||||| || |||||||| || |||| ||||||||||||| ||| || Sbjct 1183771 AAGAACTTCATCGATACTGGTGCGGGCGTCATTGACGAGGACTATCGAGGCAACGTCGGC 1183830 Query 1247 GTGCTGCTGTTTAATTTCTCAGACA 1271 || || || || || ||||||| Sbjct 1183831 GTCCTCCTCTTCAACCATTCAGACA 1183855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146375425469266