Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 127 2e-23 seq35 102 1e-15 seq24 98.7 1e-14 seq770 95.1 1e-13 seq64 95.1 1e-13 seq6 95.1 1e-13 seq13 91.5 2e-12 seq59 89.7 6e-12 >seq8 Length=2307048 Score = 127 bits (140), Expect = 2e-23 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||||||||| ||||||||||||||||||| |||||||| || ||||| |||||| Sbjct 633529 GTACTCGCCCACACGCCGCTCGAAAAAGTTGGCCTTGCCCTGCAGACTGATCATCTCCAT 633470 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 ||| ||||||||| ||| ||||||| ||| ||| | || ||||| ||||||| || Sbjct 633469 CCAGTCAAACGGGTTGACCGTGTTGTAGTACTTGTCGTACCCAAGCGAGACGAGCAGTCG 633410 Query 868819 GTCGGCGACAAAC 868831 || ||||||||| Sbjct 633409 ATCAGCGACAAAC 633397 Score = 113 bits (124), Expect = 6e-19 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 869641 GTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTCCTT 869700 ||| || ||||| |||||||||||||| || || | |||| | ||| || |||||| Sbjct 631071 GTTTTCCATGGCAATCTGGAAGCCGTAGAATGCGCGGGCCTCAGGCACCTGCACCTCCGA 631012 Query 869701 CATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAG 869760 ||||||||| | | ||||||||| |||||| ||||||||||| ||||| || |||| Sbjct 631011 CATGAACCGCGCCGACAGGTTCTCCATCACGATACCGTCGCTGGCAGCGAAGAATGCCAA 630952 Query 869761 GACGTGCTTGATAAAGTGGCGCTCGTCGTC 869790 |||| |||||||| | ||||| || || Sbjct 630951 CACGTATTTGATAAACCGCCGCTCCTCCTC 630922 >seq35 Length=1396082 Score = 102 bits (112), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 868744 CGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAG 868803 |||||||| ||||| | ||| ||||||| ||||| ||| ||| || || Sbjct 1269489 CGAGATCATGTCCATGAAGTCGAAGGGGTTGGTAACGTTGTAAGCCTTGGAGCAGCCCAG 1269430 Query 868804 CGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCAT 868863 | | | |||| |||||||| |||||||||||||| || |||||||| || |||||| Sbjct 1269429 TGCCACCAGCAAACGGTCGGCAACAAACTCGATGTATTGCGCCATGAGGCGGGAGTTCAT 1269370 Query 868864 GCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 ||| || | |||| || |||| || | |||||| |||||||| || || ||||| Sbjct 1269369 GCCAATCAAGTCCACTGGAAGCGCATCCGTGCAAAACTCATTCTCGATGTCCACCGCCTC 1269310 Query 868924 GACGATGATCT 868934 | |||||||| Sbjct 1269309 GCAGATGATCT 1269299 Score = 96.9 bits (106), Expect = 4e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || |||| || || || ||||| || ||||||||||||||| ||||| | Sbjct 1360656 TCCAAAGGCCGTAGAACAGATCACGCGCGCGCGCCTCCTCCTTGCCGTGATTCTTGCGCA 1360715 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 | || | | |||| | ||| || ||||| ||||| | |||| ||| |||||||||| Sbjct 1360716 GATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGATGTAGATGGCGAAGGCGCCCT 1360775 Query 1628585 TGCGCTTGCCGCCGCC 1628600 |||||||||||||||| Sbjct 1360776 TGCGCTTGCCGCCGCC 1360791 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 869677 CACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCC 869736 |||||| | || ||||||||||||||||| || ||||||||||| ||||||||| Sbjct 1267917 CACCTCAGGCAGCTGGACCTCCTTCATGAAGCGAATTGCCAGGTTCTCAAGCACGATGCC 1267858 Query 869737 GTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCG 869791 ||| ||||| || || || || || || ||| ||| ||||| |||||| ||||| Sbjct 1267857 GTCACTGGCAGCAAAGAATGCAAGCACATGCGAGATGAAGTGTCGCTCGCCGTCG 1267803 Score = 93.3 bits (102), Expect = 5e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 1628170 ATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGG 1628229 |||||||||||||| |||| || | | || ||||||||||||||||||| || | Sbjct 1360177 ATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCTGGTTGGATTTCTTG 1360236 Query 1628230 TTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATG 1628289 ||| | |||||||| | |||||| || ||| ||||| | ||| ||| | | |||| Sbjct 1360237 TTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCTGAGCCTCCAGGATG 1360296 Query 1628290 GCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 || |||| | || ||||| |||| || | || || ||||||| Sbjct 1360297 GCAAACCACAGTTGCTGCGCGCGCACCACCTTGCGTGCCCGGCCCT 1360342 Score = 91.5 bits (100), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1627326 CAGGTGGCGGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTT 1627385 || ||| |||| || || ||||| |||||||| | |||||| || ||| ||||| Sbjct 1358531 CAAGTGCTGGTTCACAACAGTAAACTCGCCCGATAACACGCGCCGAACGTAAATGTTCGA 1358590 Query 1627386 GGTGATGACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCAT 1627445 |||| | ||| | |||| |||||||||||||||| ||||||| ||| |||||||| Sbjct 1358591 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGGACGTCGAGGCTGTGGGCAT 1358650 Query 1627446 GAGCGCCACGAGGAGCGAGTTGCGCAGGCCGTG 1627478 | | || || | ||| ||| || | |||||| Sbjct 1358651 GGGGGCAACCAAGAGGCTGTTCCGGACGCCGTG 1358683 Score = 86.0 bits (94), Expect = 8e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| |||| ||||||||||| |||||||| ||| Sbjct 1268965 CCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGTTAGGCCGGGCATCAGGCCGCGTTTC 1268906 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| || ||| ||| || ||| ||||||||| ||||| || || || ||| Sbjct 1268905 TTGAGCCAGAAAATGCTGCAAAACGAGCCGCTGAAAAAGATACCCTCCACAGCCGCGAAG 1268846 Query 869300 CCGATGAGCCGCTCGGCAAAGG 869321 | | |||||||| | |||| Sbjct 1268845 GCTACCAGCCGCTCCGGGAAGG 1268824 >seq24 Length=1648468 Score = 98.7 bits (108), Expect = 1e-14 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| ||||||||||||||||| ||||| || || Sbjct 987711 GCTTGGCCAGCTCGCCAGGCAATACCAGTCGCACGGCGGTCTGGATTTCGCG--TGACGT 987654 Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCCAGAC---GGCCGGCCTCGGTGCCGATGCGGTCG 1254458 | || | |||| || || ||| | || || || ||||||| ||| ||| Sbjct 987653 TACAGTCG-GCTTCTTGTTGTAGCGGCTGAGCTTGGACG-CCTCGGTAGCGACTTTCTCG 987596 Query 1254459 ATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCG 1254518 | |||||||||| || |||||||| ||||||| ||| | |||||| ||| Sbjct 987595 AAGATGTCGTTGATGAAGCTGTTCATGATAGACATCGCCTTTGAGCTGATGCCAGTGTCC 987536 Query 1254519 GGGTGCACCTGCTTGAGCACCTTGTAGATGAAC 1254551 ||||| |||||||||||||||||||| ||| || Sbjct 987535 GGGTGGACCTGCTTGAGCACCTTGTAAATGTAC 987503 >seq770 Length=6244 Score = 95.1 bits (104), Expect = 1e-13 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | |||||||||||| |||||||| ||||||| || Sbjct 807 GCTTGGCCAGCTCGCCCGGCAGAACCAGGCGCACGGCAGTCTGGATTTCGCGCGA--CG- 751 Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCC--AGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || | || |||| || || ||| | || | |||||||||| | | || | Sbjct 750 TCACGGTGGGCTTCTTGTTGTAGCGGCTCAGCTTGGAGGCCTCGGTGGCAACCTTCTCAA 691 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| || |||||| | |||||| | ||| | |||||| |||| Sbjct 690 AGATGTCGTTGATGAAGCTGTTCATAATCGACATGGCCTTTGAGCTGATGCCGGTATCGG 631 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||| | ||||||||||||| Sbjct 630 GGTGCACCTGCTTCAACACCTTGTAGATG 602 >seq64 Length=802995 Score = 95.1 bits (104), Expect = 1e-13 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | |||||||||||| |||||||| ||||||| || Sbjct 451765 GCTTGGCCAGCTCGCCCGGCAGAACCAGGCGCACGGCAGTCTGGATTTCGCGCGA--CG- 451821 Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCC--AGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || | || |||| || || ||| | || | |||||||||| | | || | Sbjct 451822 TCACGGTGGGCTTCTTGTTGTAGCGGCTCAGCTTGGAGGCCTCGGTGGCAACCTTCTCAA 451881 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| || |||||| | |||||| | ||| | |||||| |||| Sbjct 451882 AGATGTCGTTGATGAAGCTGTTCATAATCGACATGGCCTTTGAGCTGATGCCGGTATCGG 451941 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||| | ||||||||||||| Sbjct 451942 GGTGCACCTGCTTCAACACCTTGTAGATG 451970 Score = 89.7 bits (98), Expect = 6e-12 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | |||||||||||| |||||||| ||||||| || Sbjct 488969 GCTTGGCCAGCTCGCCAGGCAGAACCAGGCGCACGGCAGTCTGGATTTCGCGCGA--CG- 489025 Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCC--AGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || | || |||| || || ||| | || | |||||||||| | | || | Sbjct 489026 TCACGGTGGGCTTCTTGTTGTAGCGGCTCAGCTTGGAGGCCTCGGTGGCAACCTTCTCAA 489085 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| || |||||| | |||||| | ||| | |||||| |||| Sbjct 489086 AGATGTCGTTGATGAAGCTGTTCATAATCGACATGGCCTTCGAGCTGATGCCGGTATCGG 489145 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||| | ||||||||| ||| Sbjct 489146 GGTGCACCTGCTTCAACACCTTGTAAATG 489174 >seq6 Length=2401260 Score = 95.1 bits (104), Expect = 1e-13 Identities = 132/180 (73%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC 733151 |||||||| | | || || |||||||| ||||||||| |||| | | || |||| Sbjct 2072215 GGCGACAAGTTCGCCTCCCGTCACGGCCAGAAGGGCACCTGCGGCAT--TAC-CTACACC 2072271 Query 733152 ---GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCG 733208 ||||||||||||| || ||||| | ||| ||| |||||| | |||||||| Sbjct 2072272 ATGGAGGACATGCCCT--TCTCCGCGGAG-GGCATTGTGCCGGACATCATCGTCAACCCG 2072328 Query 733209 CACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTG 733268 |||||||| || || ||||||||||| || | || | ||||| ||| || |||||||| Sbjct 2072329 CACGCCATTCCCTCCCGCATGACCATCGGACATTTGGTGGAGGCGCTCATGAGCAAGGTG 2072388 >seq13 Length=2129673 Score = 91.5 bits (100), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 |||||| |||||| || ||| ||||||| ||| || ||||||| ||| ||| | Sbjct 1983059 CCCGAGGCCCGCGGTTTCGTGGGCAACTCCTACCTACGAGGCCTCACACCGCAGGAGTTC 1983118 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 ||| | ||| || || || ||||| || || ||||||||||||||||||| ||| Sbjct 1983119 TTTTTCCACGCCATGGGTGGTCGCGAAGGTCTTATCGACACGGCCGTCAAGACCGCCTCC 1983178 Query 509156 ACGGGCTACATCCAGCGCCGGTG 509178 || || ||||||||||| |||| Sbjct 1983179 ACCGGTTACATCCAGCGAAGGTG 1983201 >seq59 Length=853771 Score = 89.7 bits (98), Expect = 6e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 755995 CCCGGTCCAGCGACATGCCCTGGCACTTGTGGATGGTCATGGCCCAGGCCAGCAGCAGGG 756054 ||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct 784996 CCCTGTCCAGCGACATGCCCTGGCACTTGTGTATGGTCAGCGCCCAGGCGAGCTTCAGGG 785055 Query 756055 GCACCTG 756061 ||||||| Sbjct 785056 GCACCTG 785062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107036537081567