Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq8 127 2e-23
seq35 102 1e-15
seq24 98.7 1e-14
seq770 95.1 1e-13
seq64 95.1 1e-13
seq6 95.1 1e-13
seq13 91.5 2e-12
seq59 89.7 6e-12
>seq8
Length=2307048
Score = 127 bits (140), Expect = 2e-23
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758
|||||||||||| ||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct 633529 GTACTCGCCCACACGCCGCTCGAAAAAGTTGGCCTTGCCCTGCAGACTGATCATCTCCAT 633470
Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818
||| ||||||||| ||| ||||||| ||| ||| | || ||||| ||||||| ||
Sbjct 633469 CCAGTCAAACGGGTTGACCGTGTTGTAGTACTTGTCGTACCCAAGCGAGACGAGCAGTCG 633410
Query 868819 GTCGGCGACAAAC 868831
|| |||||||||
Sbjct 633409 ATCAGCGACAAAC 633397
Score = 113 bits (124), Expect = 6e-19
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 869641 GTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTCCTT 869700
||| || ||||| |||||||||||||| || || | |||| | ||| || ||||||
Sbjct 631071 GTTTTCCATGGCAATCTGGAAGCCGTAGAATGCGCGGGCCTCAGGCACCTGCACCTCCGA 631012
Query 869701 CATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAG 869760
||||||||| | | ||||||||| |||||| ||||||||||| ||||| || ||||
Sbjct 631011 CATGAACCGCGCCGACAGGTTCTCCATCACGATACCGTCGCTGGCAGCGAAGAATGCCAA 630952
Query 869761 GACGTGCTTGATAAAGTGGCGCTCGTCGTC 869790
|||| |||||||| | ||||| || ||
Sbjct 630951 CACGTATTTGATAAACCGCCGCTCCTCCTC 630922
>seq35
Length=1396082
Score = 102 bits (112), Expect = 1e-15
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 868744 CGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAG 868803
|||||||| ||||| | ||| ||||||| ||||| ||| ||| || ||
Sbjct 1269489 CGAGATCATGTCCATGAAGTCGAAGGGGTTGGTAACGTTGTAAGCCTTGGAGCAGCCCAG 1269430
Query 868804 CGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCAT 868863
| | | |||| |||||||| |||||||||||||| || |||||||| || ||||||
Sbjct 1269429 TGCCACCAGCAAACGGTCGGCAACAAACTCGATGTATTGCGCCATGAGGCGGGAGTTCAT 1269370
Query 868864 GCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
||| || | |||| || |||| || | |||||| |||||||| || || |||||
Sbjct 1269369 GCCAATCAAGTCCACTGGAAGCGCATCCGTGCAAAACTCATTCTCGATGTCCACCGCCTC 1269310
Query 868924 GACGATGATCT 868934
| ||||||||
Sbjct 1269309 GCAGATGATCT 1269299
Score = 96.9 bits (106), Expect = 4e-14
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||| || |||| || || || ||||| || ||||||||||||||| ||||| |
Sbjct 1360656 TCCAAAGGCCGTAGAACAGATCACGCGCGCGCGCCTCCTCCTTGCCGTGATTCTTGCGCA 1360715
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584
| || | | |||| | ||| || ||||| ||||| | |||| ||| ||||||||||
Sbjct 1360716 GATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGATGTAGATGGCGAAGGCGCCCT 1360775
Query 1628585 TGCGCTTGCCGCCGCC 1628600
||||||||||||||||
Sbjct 1360776 TGCGCTTGCCGCCGCC 1360791
Score = 95.1 bits (104), Expect = 1e-13
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 869677 CACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCC 869736
|||||| | || ||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1267917 CACCTCAGGCAGCTGGACCTCCTTCATGAAGCGAATTGCCAGGTTCTCAAGCACGATGCC 1267858
Query 869737 GTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCG 869791
||| ||||| || || || || || || ||| ||| ||||| |||||| |||||
Sbjct 1267857 GTCACTGGCAGCAAAGAATGCAAGCACATGCGAGATGAAGTGTCGCTCGCCGTCG 1267803
Score = 93.3 bits (102), Expect = 5e-13
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 1628170 ATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGG 1628229
|||||||||||||| |||| || | | || ||||||||||||||||||| || |
Sbjct 1360177 ATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCTGGTTGGATTTCTTG 1360236
Query 1628230 TTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATG 1628289
||| | |||||||| | |||||| || ||| ||||| | ||| ||| | | ||||
Sbjct 1360237 TTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCTGAGCCTCCAGGATG 1360296
Query 1628290 GCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335
|| |||| | || ||||| |||| || | || || |||||||
Sbjct 1360297 GCAAACCACAGTTGCTGCGCGCGCACCACCTTGCGTGCCCGGCCCT 1360342
Score = 91.5 bits (100), Expect = 2e-12
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1627326 CAGGTGGCGGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTT 1627385
|| ||| |||| || || ||||| |||||||| | |||||| || ||| |||||
Sbjct 1358531 CAAGTGCTGGTTCACAACAGTAAACTCGCCCGATAACACGCGCCGAACGTAAATGTTCGA 1358590
Query 1627386 GGTGATGACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCAT 1627445
|||| | ||| | |||| |||||||||||||||| ||||||| ||| ||||||||
Sbjct 1358591 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGGACGTCGAGGCTGTGGGCAT 1358650
Query 1627446 GAGCGCCACGAGGAGCGAGTTGCGCAGGCCGTG 1627478
| | || || | ||| ||| || | ||||||
Sbjct 1358651 GGGGGCAACCAAGAGGCTGTTCCGGACGCCGTG 1358683
Score = 86.0 bits (94), Expect = 8e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||| | |||||| |||| ||||||||||| |||||||| |||
Sbjct 1268965 CCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGTTAGGCCGGGCATCAGGCCGCGTTTC 1268906
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| || ||| ||| || ||| ||||||||| ||||| || || || |||
Sbjct 1268905 TTGAGCCAGAAAATGCTGCAAAACGAGCCGCTGAAAAAGATACCCTCCACAGCCGCGAAG 1268846
Query 869300 CCGATGAGCCGCTCGGCAAAGG 869321
| | |||||||| | ||||
Sbjct 1268845 GCTACCAGCCGCTCCGGGAAGG 1268824
>seq24
Length=1648468
Score = 98.7 bits (108), Expect = 1e-14
Identities = 153/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | ||| ||||||||||||||||| ||||| || ||
Sbjct 987711 GCTTGGCCAGCTCGCCAGGCAATACCAGTCGCACGGCGGTCTGGATTTCGCG--TGACGT 987654
Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCCAGAC---GGCCGGCCTCGGTGCCGATGCGGTCG 1254458
| || | |||| || || ||| | || || || ||||||| ||| |||
Sbjct 987653 TACAGTCG-GCTTCTTGTTGTAGCGGCTGAGCTTGGACG-CCTCGGTAGCGACTTTCTCG 987596
Query 1254459 ATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCG 1254518
| |||||||||| || |||||||| ||||||| ||| | |||||| |||
Sbjct 987595 AAGATGTCGTTGATGAAGCTGTTCATGATAGACATCGCCTTTGAGCTGATGCCAGTGTCC 987536
Query 1254519 GGGTGCACCTGCTTGAGCACCTTGTAGATGAAC 1254551
||||| |||||||||||||||||||| ||| ||
Sbjct 987535 GGGTGGACCTGCTTGAGCACCTTGTAAATGTAC 987503
>seq770
Length=6244
Score = 95.1 bits (104), Expect = 1e-13
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | |||||||||||| |||||||| ||||||| ||
Sbjct 807 GCTTGGCCAGCTCGCCCGGCAGAACCAGGCGCACGGCAGTCTGGATTTCGCGCGA--CG- 751
Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCC--AGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
|| | || |||| || || ||| | || | |||||||||| | | || |
Sbjct 750 TCACGGTGGGCTTCTTGTTGTAGCGGCTCAGCTTGGAGGCCTCGGTGGCAACCTTCTCAA 691
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519
|||||||||| || |||||| | |||||| | ||| | |||||| ||||
Sbjct 690 AGATGTCGTTGATGAAGCTGTTCATAATCGACATGGCCTTTGAGCTGATGCCGGTATCGG 631
Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||||||||||||| | |||||||||||||
Sbjct 630 GGTGCACCTGCTTCAACACCTTGTAGATG 602
>seq64
Length=802995
Score = 95.1 bits (104), Expect = 1e-13
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | |||||||||||| |||||||| ||||||| ||
Sbjct 451765 GCTTGGCCAGCTCGCCCGGCAGAACCAGGCGCACGGCAGTCTGGATTTCGCGCGA--CG- 451821
Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCC--AGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
|| | || |||| || || ||| | || | |||||||||| | | || |
Sbjct 451822 TCACGGTGGGCTTCTTGTTGTAGCGGCTCAGCTTGGAGGCCTCGGTGGCAACCTTCTCAA 451881
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519
|||||||||| || |||||| | |||||| | ||| | |||||| ||||
Sbjct 451882 AGATGTCGTTGATGAAGCTGTTCATAATCGACATGGCCTTTGAGCTGATGCCGGTATCGG 451941
Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||||||||||||| | |||||||||||||
Sbjct 451942 GGTGCACCTGCTTCAACACCTTGTAGATG 451970
Score = 89.7 bits (98), Expect = 6e-12
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | |||||||||||| |||||||| ||||||| ||
Sbjct 488969 GCTTGGCCAGCTCGCCAGGCAGAACCAGGCGCACGGCAGTCTGGATTTCGCGCGA--CG- 489025
Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCC--AGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
|| | || |||| || || ||| | || | |||||||||| | | || |
Sbjct 489026 TCACGGTGGGCTTCTTGTTGTAGCGGCTCAGCTTGGAGGCCTCGGTGGCAACCTTCTCAA 489085
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519
|||||||||| || |||||| | |||||| | ||| | |||||| ||||
Sbjct 489086 AGATGTCGTTGATGAAGCTGTTCATAATCGACATGGCCTTCGAGCTGATGCCGGTATCGG 489145
Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||||||||||||| | ||||||||| |||
Sbjct 489146 GGTGCACCTGCTTCAACACCTTGTAAATG 489174
>seq6
Length=2401260
Score = 95.1 bits (104), Expect = 1e-13
Identities = 132/180 (73%), Gaps = 9/180 (5%)
Strand=Plus/Plus
Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC 733151
|||||||| | | || || |||||||| ||||||||| |||| | | || ||||
Sbjct 2072215 GGCGACAAGTTCGCCTCCCGTCACGGCCAGAAGGGCACCTGCGGCAT--TAC-CTACACC 2072271
Query 733152 ---GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCG 733208
||||||||||||| || ||||| | ||| ||| |||||| | ||||||||
Sbjct 2072272 ATGGAGGACATGCCCT--TCTCCGCGGAG-GGCATTGTGCCGGACATCATCGTCAACCCG 2072328
Query 733209 CACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTG 733268
|||||||| || || ||||||||||| || | || | ||||| ||| || ||||||||
Sbjct 2072329 CACGCCATTCCCTCCCGCATGACCATCGGACATTTGGTGGAGGCGCTCATGAGCAAGGTG 2072388
>seq13
Length=2129673
Score = 91.5 bits (100), Expect = 2e-12
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
|||||| |||||| || ||| ||||||| ||| || ||||||| ||| ||| |
Sbjct 1983059 CCCGAGGCCCGCGGTTTCGTGGGCAACTCCTACCTACGAGGCCTCACACCGCAGGAGTTC 1983118
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
||| | ||| || || || ||||| || || ||||||||||||||||||| |||
Sbjct 1983119 TTTTTCCACGCCATGGGTGGTCGCGAAGGTCTTATCGACACGGCCGTCAAGACCGCCTCC 1983178
Query 509156 ACGGGCTACATCCAGCGCCGGTG 509178
|| || ||||||||||| ||||
Sbjct 1983179 ACCGGTTACATCCAGCGAAGGTG 1983201
>seq59
Length=853771
Score = 89.7 bits (98), Expect = 6e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 755995 CCCGGTCCAGCGACATGCCCTGGCACTTGTGGATGGTCATGGCCCAGGCCAGCAGCAGGG 756054
||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||
Sbjct 784996 CCCTGTCCAGCGACATGCCCTGGCACTTGTGTATGGTCAGCGCCCAGGCGAGCTTCAGGG 785055
Query 756055 GCACCTG 756061
|||||||
Sbjct 785056 GCACCTG 785062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107036537081567
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