Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq35 98.7 6e-16 seq67 89.7 3e-13 seq48 84.2 1e-11 >seq35 Length=1396082 Score = 98.7 bits (108), Expect = 6e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||||||||||||||||||||| ||||||| || |||| |||| Sbjct 1305105 AGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCC 1305046 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||||| ||||| || || || ||||| || |||||||| |||| Sbjct 1305045 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305002 Score = 98.7 bits (108), Expect = 6e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||||||||||||||||||||| ||||||| || |||| |||| Sbjct 1305457 AGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCC 1305398 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||||| ||||| || || || ||||| || |||||||| |||| Sbjct 1305397 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305354 Score = 98.7 bits (108), Expect = 6e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||||||||||||||||||||| ||||||| || |||| |||| Sbjct 1305828 AGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCC 1305769 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||||| ||||| || || || ||||| || |||||||| |||| Sbjct 1305768 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305725 Score = 98.7 bits (108), Expect = 6e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||||||||||||||||||||| ||||||| || |||| |||| Sbjct 1306199 AGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCC 1306140 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||||| ||||| || || || ||||| || |||||||| |||| Sbjct 1306139 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1306096 >seq67 Length=753185 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | |||||||||||||| ||||| ||||| | ||| | || |||| Sbjct 68293 CAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATC 68352 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||| ||||| || |||||||| Sbjct 68353 CTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68391 >seq48 Length=1037572 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||||||||||||| || || ||||| | || | ||| |||| Sbjct 716284 CAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCCAGCGTACGCCCATC 716225 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || |||||||| || |||||||||| || |||||||| Sbjct 716224 CTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTC 716186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687834304369