Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq35 98.7 6e-16
seq67 89.7 3e-13
seq48 84.2 1e-11
>seq35
Length=1396082
Score = 98.7 bits (108), Expect = 6e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | ||||||||||||||||||||| ||||||| || |||| ||||
Sbjct 1305105 AGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCC 1305046
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||||| ||||| || || || ||||| || |||||||| ||||
Sbjct 1305045 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305002
Score = 98.7 bits (108), Expect = 6e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | ||||||||||||||||||||| ||||||| || |||| ||||
Sbjct 1305457 AGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCC 1305398
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||||| ||||| || || || ||||| || |||||||| ||||
Sbjct 1305397 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305354
Score = 98.7 bits (108), Expect = 6e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | ||||||||||||||||||||| ||||||| || |||| ||||
Sbjct 1305828 AGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCC 1305769
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||||| ||||| || || || ||||| || |||||||| ||||
Sbjct 1305768 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305725
Score = 98.7 bits (108), Expect = 6e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | ||||||||||||||||||||| ||||||| || |||| ||||
Sbjct 1306199 AGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCC 1306140
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||||| ||||| || || || ||||| || |||||||| ||||
Sbjct 1306139 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1306096
>seq67
Length=753185
Score = 89.7 bits (98), Expect = 3e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| ||||| || | |||||||||||||| ||||| ||||| | ||| | || ||||
Sbjct 68293 CAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATC 68352
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863
||||| ||||| |||||||| ||||| || ||||||||
Sbjct 68353 CTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68391
>seq48
Length=1037572
Score = 84.2 bits (92), Expect = 1e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | |||||||||||||| || || ||||| | || | ||| ||||
Sbjct 716284 CAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCCAGCGTACGCCCATC 716225
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863
|| |||||||| || |||||||||| || ||||||||
Sbjct 716224 CTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTC 716186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325687834304369
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |