Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq10 197 2e-45 >seq10 Length=2191866 Score = 197 bits (218), Expect = 2e-45 Identities = 208/271 (77%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 || || |||||| | ||||| || | |||||||| || ||||||||||||| ||| | Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| ||| ||| | | ||||| ||| | || ||| |||| ||| |||||||||| Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCATCGCTGCTCC 2092254 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || |||||||| || || |||||||| || | ||||| || | ||||||||||| Sbjct 2092253 GCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAA 2092194 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 ||||||| | ||||| ||||| ||| |||| ||||| || || || || ||||| || || Sbjct 2092193 CATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAAT 2092134 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTG 177827 |||||||| || || || ||||||||| || Sbjct 2092133 TTGGGAAGCTGCTTCTCTAGATGAGTGGTTG 2092103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605657728879160