Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq35 114 1e-20 >seq35 Length=1396082 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 12/202 (6%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || ||||| |||||||| || || ||||| ||| |||||||||||||| ||||| |||| Sbjct 1357978 GTCCGCAGGTAGTACATTCCAGTTTTGAGACCCTTGCGCCATGCGTAGAAGTGCAGCGAC 1358037 Query 148011 GACATGAGCGT---GTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||||| | | | | || | ||||| || | || |||||||| ||||||| Sbjct 1358038 G---TGAGCTTGCCGAAATTAGGATCCGGCATGAAGACGTTGAACGACTGCGACTGGTCA 1358094 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAG 148124 ||| | || || |||||||||||||| || | || |||| ||| |||||||| Sbjct 1358095 ATGTAGGCCCCGCGGTCAGCGGCCATGTCCACTAGCGTGCGCT---GCTTAATCTCCCAA 1358151 Query 148125 GCCGTCTTGTACAGCCGCTTGA 148146 |||||||||||| | ||||| Sbjct 1358152 ACCGTCTTGTACAACGCCTTGA 1358173 Score = 102 bits (112), Expect = 8e-17 Identities = 119/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| | ||||||| |||||||||| || ||||| ||||| ||||| || | Sbjct 1360166 TGTACTCAATAATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCTGGT 1360225 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 || || ||||||||| ||||||||||| ||||||||| ||| || |||||||| | Sbjct 1360226 TGGATTTCTTGTTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCTGAG 1360285 Query 148984 TTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCAC 149020 |||| ||| || | | ||| | |||||||||||| Sbjct 1360286 CCTCCAGGATGGCAAACCA--CAGTTGCTGCGCGCGCAC 1360322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413240507240