Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq35 114 1e-20
>seq35
Length=1396082
Score = 114 bits (126), Expect = 1e-20
Identities = 148/202 (73%), Gaps = 12/202 (6%)
Strand=Plus/Plus
Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010
|| ||||| |||||||| || || ||||| ||| |||||||||||||| ||||| ||||
Sbjct 1357978 GTCCGCAGGTAGTACATTCCAGTTTTGAGACCCTTGCGCCATGCGTAGAAGTGCAGCGAC 1358037
Query 148011 GACATGAGCGT---GTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067
| ||||| | | | | || | ||||| || | || |||||||| |||||||
Sbjct 1358038 G---TGAGCTTGCCGAAATTAGGATCCGGCATGAAGACGTTGAACGACTGCGACTGGTCA 1358094
Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAG 148124
||| | || || |||||||||||||| || | || |||| ||| ||||||||
Sbjct 1358095 ATGTAGGCCCCGCGGTCAGCGGCCATGTCCACTAGCGTGCGCT---GCTTAATCTCCCAA 1358151
Query 148125 GCCGTCTTGTACAGCCGCTTGA 148146
|||||||||||| | |||||
Sbjct 1358152 ACCGTCTTGTACAACGCCTTGA 1358173
Score = 102 bits (112), Expect = 8e-17
Identities = 119/159 (75%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923
||||||| | ||||||| |||||||||| || ||||| ||||| ||||| || |
Sbjct 1360166 TGTACTCAATAATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCTGGT 1360225
Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983
|| || ||||||||| ||||||||||| ||||||||| ||| || |||||||| |
Sbjct 1360226 TGGATTTCTTGTTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCTGAG 1360285
Query 148984 TTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCAC 149020
|||| ||| || | | ||| | ||||||||||||
Sbjct 1360286 CCTCCAGGATGGCAAACCA--CAGTTGCTGCGCGCGCAC 1360322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483413240507240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |