Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq10 141 3e-29 >seq10 Length=2191866 Score = 141 bits (156), Expect = 3e-29 Identities = 199/277 (72%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 28624 TGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTT 28683 |||| | |||| | | ||| ||||||| || | ||||| ||||| | || ||||| Sbjct 2092381 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTC 2092322 Query 28684 GGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCAT 28742 || | | ||||| || ||||| ||| | || || ||| | || || || || ||||| Sbjct 2092321 GGTGTAATCATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCAT 2092263 Query 28743 TGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTA 28802 || || || ||||| ||||| ||||| || || ||||| || | || |||||| || Sbjct 2092262 CGCTGCTCCGCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTA 2092203 Query 28803 TGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTT 28862 ||| ||||||||||| | || || || || || | || || ||||| || || || Sbjct 2092202 TGGTAACAACATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTT 2092143 Query 28863 CTACCCAATTTGGGAAGCTAATTCACTTGATGAATGG 28899 ||||||||||||||||||| ||| || ||||| ||| Sbjct 2092142 CTACCCAATTTGGGAAGCTGCTTCTCTAGATGAGTGG 2092106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146663421190846