Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq64 123 4e-22
seq9 113 6e-19
seq50 109 8e-18
seq24 107 3e-17
seq5 105 1e-16
seq770 104 3e-16
seq35 104 3e-16
seq8 98.7 1e-14
seq7 96.9 5e-14
seq6 93.3 6e-13
seq13 91.5 2e-12
seq59 86.0 9e-11
>seq64
Length=802995
Score = 123 bits (136), Expect = 4e-22
Identities = 170/235 (72%), Gaps = 12/235 (5%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||| | ||||||||||||||| |||| |||| | | ||| ||
Sbjct 451969 ATCTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGG-----CATCAGCTCA-AAGGCC 451916
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||| |||||| || |||||||||| | || | | ||||||||||
Sbjct 451915 ATGTCGATTATGAACAGCTTCATCAACGACATCTTTGAGAAGGTTGCCACCGAGGCCTCC 451856
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087
||| |||| ||||||| || | | || ||| ||||| |||||||| |||
Sbjct 451855 AAGCTGAGCCGCTACAACAAG---AAGCCCACCGTGACGTCGCGCGAAATCCAGACTGCC 451799
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||||||| | ||| ||||| ||||||| ||||||||| |||||||||||||
Sbjct 451798 GTGCGCCTGGTTCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 451744
Score = 118 bits (130), Expect = 2e-20
Identities = 170/237 (72%), Gaps = 16/237 (7%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGT 724968
|| ||||||||| | ||||||||||||||| |||| |||| ||| || |
Sbjct 489173 ATTTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGG-----CATCAGCTCGAA---GG 489122
Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028
|||||||||| |||||| || |||||||||| | || | | ||||||||||
Sbjct 489121 CCATGTCGATTATGAACAGCTTCATCAACGACATCTTTGAGAAGGTTGCCACCGAGGCCT 489062
Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCG 725085
||| |||| ||||||| || | | || ||| ||||| |||||||| |
Sbjct 489061 CCAAGCTGAGCCGCTACAACAAG---AAGCCCACCGTGACGTCGCGCGAAATCCAGACTG 489005
Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||||||||| | ||| ||||| ||||||| ||||||||| |||||||||||||
Sbjct 489004 CCGTGCGCCTGGTTCTGCCTGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 488948
Score = 104 bits (114), Expect = 3e-16
Identities = 167/237 (70%), Gaps = 16/237 (7%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGT 724968
|| ||||||||| | ||||||||||||||| |||| |||| ||| || |
Sbjct 471387 ATTTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGG-----CATCAGCTCGAA---GG 471438
Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028
|||||||||| |||||| || |||||||||| | || | | ||||||||||
Sbjct 471439 CCATGTCGATTATGAACAGCTTCATCAACGACATCTTTGAGAAGGTTGCCACCGAGGCCT 471498
Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCG 725085
||| |||| ||||||| || | | || ||| ||||| || ||||| |
Sbjct 471499 CCAAGCTGAGCCGCTACAACAAG---AAGCCCACCGTGACGTCGCGCGAAATTCAGACTG 471555
Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||||||||| | | | ||||| ||||||| ||||||||| |||||||||||||
Sbjct 471556 CTGTGCGCCTGGTTCTTCCGGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 471612
>seq9
Length=2229794
Score = 113 bits (124), Expect = 6e-19
Identities = 131/177 (74%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023
|||| ||||||| |||||||| || ||| ||||||| || ||||| || | | |||
Sbjct 1192660 CAAGGCCATGTCTATCATGAATTCCTTTATCAACGATATCTTCGACAAGATGGCGAACGA 1192719
Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083
||| | |||||||| | | ||||||| ||| | | | ||||| ||||||||
Sbjct 1192720 GGCTGTCCGCCTGGCCCAGTACAACAAGAAGCCCACCCTGACCTCTCGCGAAATCCAGAC 1192779
Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||||| |||||| || | | |||||| || |||| |||||| || |||||||||||
Sbjct 1192780 GGCCGTCCGCCTGGTCCTTCCCGGCGAGCTTGCCAAGCACGCTGTGTCCGAGGGCAC 1192836
>seq50
Length=1026462
Score = 109 bits (120), Expect = 8e-18
Identities = 170/237 (72%), Gaps = 16/237 (7%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGT 724968
||||||||||| || |||||||||||||| || ||| |||| |||||| |
Sbjct 786150 ATCTACAAGGTCCTGAAGCAGGTGCACCCAGACAC---TGG--CATCAGCTCCAA---GG 786099
Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028
|||||||||| |||||| || |||||||||| | || ||| ||||||||||
Sbjct 786098 CCATGTCGATTATGAACAGCTTCATCAACGACATTTTTGAAAAGGTCGCCACCGAGGCC- 786040
Query 725029 GTC---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085
|| || || |||| ||||||| ||| | | | ||||| ||||||||||
Sbjct 786039 -TCCAAGCTCAGC-CGCTACAACAAGAAGCCCACCGTTACCTCTCGCGAAATCCAGACCG 785982
Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || |||||| | ||| ||||| ||||||| ||||||||| || ||||| ||||
Sbjct 785981 CTGTTCGCCTGGTGCTGCCAGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGTACCA 785925
>seq24
Length=1648468
Score = 107 bits (118), Expect = 3e-17
Identities = 171/238 (72%), Gaps = 18/238 (8%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|| |||||||||||||||||||| ||||| || ||| |||| | | ||| |
Sbjct 987507 ATTTACAAGGTGCTCAAGCAGGTCCACCCGGACAC---TGG--CATCAGCTCA-AAGGCG 987560
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| ||||||||| || |||||||||| |||| ||| |||||||| ||
Sbjct 987561 ATGTCTATCATGAACAGCTTCATCAACGACATCTTCGAGAAAGTCGCTACCGAGGC--GT 987618
Query 725031 C---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACC 725084
| || || |||| ||||||| || ||| | ||| ||||| |||||||||
Sbjct 987619 CCAAGCTCAGC-CGCTACAACAAG---AAGCCGACTGTAACGTCACGCGAAATCCAGACC 987674
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||||| ||| | ||| ||||| ||||||| |||||| ||||| ||||| ||||
Sbjct 987675 GCCGTGCGACTGGTATTGCCTGGCGAGCTGGCCAAGCACGCTGTCTCGGAGGGTACCA 987732
>seq5
Length=2431615
Score = 105 bits (116), Expect = 1e-16
Identities = 171/240 (71%), Gaps = 22/240 (9%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGT 724968
||||| |||||||| |||||||||||||| |||| |||| |||||| |
Sbjct 1883461 ATCTATAAGGTGCTGAAGCAGGTGCACCCTGACACCGG-----CATCAGCTCCAA---GG 1883512
Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028
| ||| ||||||||| || |||||||||| | || ||| |||||||||
Sbjct 1883513 CGATGAGCATCATGAACAGCTTCATCAACGACATATTTGAGAAGGTCGCCACCGAGGCT- 1883571
Query 725029 GTC---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGA 725082
|| || | || || | ||||||| || ||| || |||| ||||| |||||||
Sbjct 1883572 -TCAAAGCTTAGC-CGTTACAACAAG---AAGCCGACCGTCACGTCTCGCGAAATCCAGA 1883626
Query 725083 CCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||||||||||| || ||| ||||| ||||||| |||||| || |||||||| ||||
Sbjct 1883627 CTGCCGTGCGCCTTGTCCTGCCAGGCGAGCTGGCCAAGCACGCTGTGTCCGAGGGAACCA 1883686
>seq770
Length=6244
Score = 104 bits (114), Expect = 3e-16
Identities = 157/221 (71%), Gaps = 12/221 (5%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||| | ||||||||||||||| |||| |||| | | ||| ||
Sbjct 603 ATCTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGG-----CATCAGCTCA-AAGGCC 656
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||| |||||| || |||||||||| | || | | ||||||||||
Sbjct 657 ATGTCGATTATGAACAGCTTCATCAACGACATCTTTGAGAAGGTTGCCACCGAGGCCTCC 716
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087
||| |||| ||||||| || | | || ||| ||||| |||||||| |||
Sbjct 717 AAGCTGAGCCGCTACAACAAG---AAGCCCACCGTGACGTCGCGCGAAATCCAGACTGCC 773
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGT 725128
||||||||| | ||| ||||| ||||||| |||||||||
Sbjct 774 GTGCGCCTGGTTCTGCCGGGCGAGCTGGCCAAGCACGCCGT 814
>seq35
Length=1396082
Score = 104 bits (114), Expect = 3e-16
Identities = 119/159 (75%), Gaps = 6/159 (4%)
Strand=Plus/Minus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|||||||||||||||||||||||||| ||| |||| | || || ||||| || ||| ||
Sbjct 1360791 GGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATCGAGCCCTGGCATGCGGACGTC 1360732
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| | | |||| || ||||| |||||||| ||||| || || |||||||
Sbjct 1360731 TTCGAGTTTTTGGATCTGCGCAAGAATCACGGCAA-GGAGGAGG-----CGCGCGCGCGT 1360678
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATG 261946
||||| || |||||||| |||| |||||||| |||
Sbjct 1360677 GATCTGTTCTACGGCCTTTGGATTCCGGACCTGTTCATG 1360639
Score = 98.7 bits (108), Expect = 1e-14
Identities = 121/164 (74%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 1455819 GCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAG 1455878
|| ||||| || ||||| || | |||| | || |||| | |||| ||||| ||||
Sbjct 1267753 GCTGAGGAAGTTGACCTGGGTGATGACATGAAGCATTGGGAGAAGCTGTCCGACGGCGAG 1267812
Query 1455879 CGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGA 1455938
|| || |||||| ||| || || || || ||| || ||||| || ||||||||| ||
Sbjct 1267813 CGACACTTCATCTCGCATGTGCTTGCATTCTTT-GCTGCCAGTGACGGCATCGTGCTTGA 1267871
Query 1455939 GAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGG 1455982
||||||||| ||||| ||||| |||||||| |||| ||||
Sbjct 1267872 GAACCTGGCAATTCGCTTCATGAAGGAGGTCCAGCTGCCTGAGG 1267915
>seq8
Length=2307048
Score = 98.7 bits (108), Expect = 1e-14
Identities = 103/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA 1456686
|||||||| || || ||||||| |||| || | || | ||| ||||| |||| |||
Sbjct 633398 TTTGTCGCTGATCGACTGCTCGTCTCGCTTGGGTACG-ACAAGTACTACAACACGGTCAA 633456
Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCG 1456746
|||||| ||||||||| ||||| || |||||||| |||||||||||||||| ||
Sbjct 633457 CCCGTTTGACTGGATGGAGATGATCAGTCTGCAGGGCAAGGCCAACTTTTTCGAGCGGCG 633516
Query 1456747 CGT-GGCGAGTAC 1456758
|| |||||||||
Sbjct 633517 TGTGGGCGAGTAC 633529
>seq7
Length=2412439
Score = 96.9 bits (106), Expect = 5e-14
Identities = 166/238 (70%), Gaps = 16/238 (7%)
Strand=Plus/Plus
Query 724910 TATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAG 724967
||| ||||||||||| |||||||| ||||| |||| |||| |||||| |
Sbjct 337689 TATTTACAAGGTGCTGAAGCAGGTTCACCCAGATACCGG-----CATCAGCTCCAA---G 337740
Query 724968 TCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCC 725027
| ||| || |||||| || ||||||| || |||| ||| ||| ||||||
Sbjct 337741 GCTATGAGCATTATGAACAGCTTCATCAACGATATTTTCGAGAAGGTCGCCACGGAGGCC 337800
Query 725028 GGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACC 725084
|||||| |||| ||||||| || | | || ||| ||||| || |||||
Sbjct 337801 TCCCGCCTGAGCCGCTACAACAAG---AAGCCCACCGTCACTTCTCGCGAAATTCAGACG 337857
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||||||||| | | | ||||| ||||||| |||||| || || ||||||||||
Sbjct 337858 GCCGTGCGCCTGGTGCTTCCTGGCGAGCTGGCCAAGCACGCGGTGTCGGAGGGCACCA 337915
>seq6
Length=2401260
Score = 93.3 bits (102), Expect = 6e-13
Identities = 136/187 (73%), Gaps = 13/187 (7%)
Strand=Plus/Minus
Query 1600558 CACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTG 1600617
|||||||| || ||| ||||||| || | || ||||||||||| || || ||||||||
Sbjct 2072388 CACCTTGCTCATGAGCGCCTCCACCAAATGTCCGATGGTCATGCGGGAGGGAATGGCGTG 2072329
Query 1600618 CGGGTTGATCACAATGTCGGG--CGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC- 1600674
|||||||| | ||||| || | || || ||||| || |||||||||||||
Sbjct 2072328 CGGGTTGACGATGATGTCCGGCACAATGC-CCTCCGCG----GAGAAGGGCATGTCCTCC 2072274
Query 1600675 --GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCG 1600732
|||| || | | |||| ||||||||| |||||||| || || | | ||||||
Sbjct 2072273 ATGGTGTAG-GTA--ATGCCGCAGGTGCCCTTCTGGCCGTGACGGGAGGCGAACTTGTCG 2072217
Query 1600733 CCCACCT 1600739
|| ||||
Sbjct 2072216 CCAACCT 2072210
>seq13
Length=2129673
Score = 91.5 bits (100), Expect = 2e-12
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 1816142 CACCGGCGCTGGATGTAGCCACGTCCGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCG 1816201
|||| ||||||||||| || ||||||||||||||||||||||| || || |||
Sbjct 1983201 CACCTTCGCTGGATGTAACCGGTGGAGGCGGTCTTGACGGCCGTGTCGATAAGACCTTCG 1983142
Query 1816202 CGGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTG 1816261
|| || || || ||| ||||| | ||| ||| ||||||| || ||| ||||||
Sbjct 1983141 CGACCACCCATGGCGTGGAAAAAGAACTCCTGCGGTGTGAGGCCTCGTAGGTAGGAGTTG 1983082
Query 1816262 CGCACAAAGCCGCGGCTCTCGGG 1816284
| ||| || |||||| ||||||
Sbjct 1983081 CCCACGAAACCGCGGGCCTCGGG 1983059
>seq59
Length=853771
Score = 86.0 bits (94), Expect = 9e-11
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 1571190 CAGGTGCCCCTGCTGCTGGCGTGGGCCATGACCATCCACAAGTGCCAGGGCATGTCGCTG 1571249
|||||||||||| ||| || ||||| ||||||| ||||||||||||||||||||||||
Sbjct 785062 CAGGTGCCCCTGAAGCTCGCCTGGGCGCTGACCATACACAAGTGCCAGGGCATGTCGCTG 785003
Query 1571250 GACCGGG 1571256
||| |||
Sbjct 785002 GACAGGG 784996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177690538750662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |