Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq64 123 4e-22 seq9 113 6e-19 seq50 109 8e-18 seq24 107 3e-17 seq5 105 1e-16 seq770 104 3e-16 seq35 104 3e-16 seq8 98.7 1e-14 seq7 96.9 5e-14 seq6 93.3 6e-13 seq13 91.5 2e-12 seq59 86.0 9e-11 >seq64 Length=802995 Score = 123 bits (136), Expect = 4e-22 Identities = 170/235 (72%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||||||||||||| |||| |||| | | ||| || Sbjct 451969 ATCTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGG-----CATCAGCTCA-AAGGCC 451916 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||| || |||||||||| | || | | |||||||||| Sbjct 451915 ATGTCGATTATGAACAGCTTCATCAACGACATCTTTGAGAAGGTTGCCACCGAGGCCTCC 451856 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 ||| |||| ||||||| || | | || ||| ||||| |||||||| ||| Sbjct 451855 AAGCTGAGCCGCTACAACAAG---AAGCCCACCGTGACGTCGCGCGAAATCCAGACTGCC 451799 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||| | ||| ||||| ||||||| ||||||||| ||||||||||||| Sbjct 451798 GTGCGCCTGGTTCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 451744 Score = 118 bits (130), Expect = 2e-20 Identities = 170/237 (72%), Gaps = 16/237 (7%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGT 724968 || ||||||||| | ||||||||||||||| |||| |||| ||| || | Sbjct 489173 ATTTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGG-----CATCAGCTCGAA---GG 489122 Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||||||||| |||||| || |||||||||| | || | | |||||||||| Sbjct 489121 CCATGTCGATTATGAACAGCTTCATCAACGACATCTTTGAGAAGGTTGCCACCGAGGCCT 489062 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCG 725085 ||| |||| ||||||| || | | || ||| ||||| |||||||| | Sbjct 489061 CCAAGCTGAGCCGCTACAACAAG---AAGCCCACCGTGACGTCGCGCGAAATCCAGACTG 489005 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||||| | ||| ||||| ||||||| ||||||||| ||||||||||||| Sbjct 489004 CCGTGCGCCTGGTTCTGCCTGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 488948 Score = 104 bits (114), Expect = 3e-16 Identities = 167/237 (70%), Gaps = 16/237 (7%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGT 724968 || ||||||||| | ||||||||||||||| |||| |||| ||| || | Sbjct 471387 ATTTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGG-----CATCAGCTCGAA---GG 471438 Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||||||||| |||||| || |||||||||| | || | | |||||||||| Sbjct 471439 CCATGTCGATTATGAACAGCTTCATCAACGACATCTTTGAGAAGGTTGCCACCGAGGCCT 471498 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCG 725085 ||| |||| ||||||| || | | || ||| ||||| || ||||| | Sbjct 471499 CCAAGCTGAGCCGCTACAACAAG---AAGCCCACCGTGACGTCGCGCGAAATTCAGACTG 471555 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||| | | | ||||| ||||||| ||||||||| ||||||||||||| Sbjct 471556 CTGTGCGCCTGGTTCTTCCGGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 471612 >seq9 Length=2229794 Score = 113 bits (124), Expect = 6e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||||| |||||||| || ||| ||||||| || ||||| || | | ||| Sbjct 1192660 CAAGGCCATGTCTATCATGAATTCCTTTATCAACGATATCTTCGACAAGATGGCGAACGA 1192719 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| | |||||||| | | ||||||| ||| | | | ||||| |||||||| Sbjct 1192720 GGCTGTCCGCCTGGCCCAGTACAACAAGAAGCCCACCCTGACCTCTCGCGAAATCCAGAC 1192779 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| |||||| || | | |||||| || |||| |||||| || ||||||||||| Sbjct 1192780 GGCCGTCCGCCTGGTCCTTCCCGGCGAGCTTGCCAAGCACGCTGTGTCCGAGGGCAC 1192836 >seq50 Length=1026462 Score = 109 bits (120), Expect = 8e-18 Identities = 170/237 (72%), Gaps = 16/237 (7%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGT 724968 ||||||||||| || |||||||||||||| || ||| |||| |||||| | Sbjct 786150 ATCTACAAGGTCCTGAAGCAGGTGCACCCAGACAC---TGG--CATCAGCTCCAA---GG 786099 Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||||||||| |||||| || |||||||||| | || ||| |||||||||| Sbjct 786098 CCATGTCGATTATGAACAGCTTCATCAACGACATTTTTGAAAAGGTCGCCACCGAGGCC- 786040 Query 725029 GTC---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085 || || || |||| ||||||| ||| | | | ||||| |||||||||| Sbjct 786039 -TCCAAGCTCAGC-CGCTACAACAAGAAGCCCACCGTTACCTCTCGCGAAATCCAGACCG 785982 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || |||||| | ||| ||||| ||||||| ||||||||| || ||||| |||| Sbjct 785981 CTGTTCGCCTGGTGCTGCCAGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGTACCA 785925 >seq24 Length=1648468 Score = 107 bits (118), Expect = 3e-17 Identities = 171/238 (72%), Gaps = 18/238 (8%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||||||||||||||| ||||| || ||| |||| | | ||| | Sbjct 987507 ATTTACAAGGTGCTCAAGCAGGTCCACCCGGACAC---TGG--CATCAGCTCA-AAGGCG 987560 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| || |||||||||| |||| ||| |||||||| || Sbjct 987561 ATGTCTATCATGAACAGCTTCATCAACGACATCTTCGAGAAAGTCGCTACCGAGGC--GT 987618 Query 725031 C---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACC 725084 | || || |||| ||||||| || ||| | ||| ||||| ||||||||| Sbjct 987619 CCAAGCTCAGC-CGCTACAACAAG---AAGCCGACTGTAACGTCACGCGAAATCCAGACC 987674 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| ||| | ||| ||||| ||||||| |||||| ||||| ||||| |||| Sbjct 987675 GCCGTGCGACTGGTATTGCCTGGCGAGCTGGCCAAGCACGCTGTCTCGGAGGGTACCA 987732 >seq5 Length=2431615 Score = 105 bits (116), Expect = 1e-16 Identities = 171/240 (71%), Gaps = 22/240 (9%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGT 724968 ||||| |||||||| |||||||||||||| |||| |||| |||||| | Sbjct 1883461 ATCTATAAGGTGCTGAAGCAGGTGCACCCTGACACCGG-----CATCAGCTCCAA---GG 1883512 Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 | ||| ||||||||| || |||||||||| | || ||| ||||||||| Sbjct 1883513 CGATGAGCATCATGAACAGCTTCATCAACGACATATTTGAGAAGGTCGCCACCGAGGCT- 1883571 Query 725029 GTC---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGA 725082 || || | || || | ||||||| || ||| || |||| ||||| ||||||| Sbjct 1883572 -TCAAAGCTTAGC-CGTTACAACAAG---AAGCCGACCGTCACGTCTCGCGAAATCCAGA 1883626 Query 725083 CCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||||| || ||| ||||| ||||||| |||||| || |||||||| |||| Sbjct 1883627 CTGCCGTGCGCCTTGTCCTGCCAGGCGAGCTGGCCAAGCACGCTGTGTCCGAGGGAACCA 1883686 >seq770 Length=6244 Score = 104 bits (114), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 12/221 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||||||||||||| |||| |||| | | ||| || Sbjct 603 ATCTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGG-----CATCAGCTCA-AAGGCC 656 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||| || |||||||||| | || | | |||||||||| Sbjct 657 ATGTCGATTATGAACAGCTTCATCAACGACATCTTTGAGAAGGTTGCCACCGAGGCCTCC 716 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 ||| |||| ||||||| || | | || ||| ||||| |||||||| ||| Sbjct 717 AAGCTGAGCCGCTACAACAAG---AAGCCCACCGTGACGTCGCGCGAAATCCAGACTGCC 773 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGT 725128 ||||||||| | ||| ||||| ||||||| ||||||||| Sbjct 774 GTGCGCCTGGTTCTGCCGGGCGAGCTGGCCAAGCACGCCGT 814 >seq35 Length=1396082 Score = 104 bits (114), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 |||||||||||||||||||||||||| ||| |||| | || || ||||| || ||| || Sbjct 1360791 GGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATCGAGCCCTGGCATGCGGACGTC 1360732 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||| || ||||| |||||||| ||||| || || ||||||| Sbjct 1360731 TTCGAGTTTTTGGATCTGCGCAAGAATCACGGCAA-GGAGGAGG-----CGCGCGCGCGT 1360678 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATG 261946 ||||| || |||||||| |||| |||||||| ||| Sbjct 1360677 GATCTGTTCTACGGCCTTTGGATTCCGGACCTGTTCATG 1360639 Score = 98.7 bits (108), Expect = 1e-14 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 1455819 GCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAG 1455878 || ||||| || ||||| || | |||| | || |||| | |||| ||||| |||| Sbjct 1267753 GCTGAGGAAGTTGACCTGGGTGATGACATGAAGCATTGGGAGAAGCTGTCCGACGGCGAG 1267812 Query 1455879 CGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGA 1455938 || || |||||| ||| || || || || ||| || ||||| || ||||||||| || Sbjct 1267813 CGACACTTCATCTCGCATGTGCTTGCATTCTTT-GCTGCCAGTGACGGCATCGTGCTTGA 1267871 Query 1455939 GAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGG 1455982 ||||||||| ||||| ||||| |||||||| |||| |||| Sbjct 1267872 GAACCTGGCAATTCGCTTCATGAAGGAGGTCCAGCTGCCTGAGG 1267915 >seq8 Length=2307048 Score = 98.7 bits (108), Expect = 1e-14 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA 1456686 |||||||| || || ||||||| |||| || | || | ||| ||||| |||| ||| Sbjct 633398 TTTGTCGCTGATCGACTGCTCGTCTCGCTTGGGTACG-ACAAGTACTACAACACGGTCAA 633456 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCG 1456746 |||||| ||||||||| ||||| || |||||||| |||||||||||||||| || Sbjct 633457 CCCGTTTGACTGGATGGAGATGATCAGTCTGCAGGGCAAGGCCAACTTTTTCGAGCGGCG 633516 Query 1456747 CGT-GGCGAGTAC 1456758 || ||||||||| Sbjct 633517 TGTGGGCGAGTAC 633529 >seq7 Length=2412439 Score = 96.9 bits (106), Expect = 5e-14 Identities = 166/238 (70%), Gaps = 16/238 (7%) Strand=Plus/Plus Query 724910 TATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAG 724967 ||| ||||||||||| |||||||| ||||| |||| |||| |||||| | Sbjct 337689 TATTTACAAGGTGCTGAAGCAGGTTCACCCAGATACCGG-----CATCAGCTCCAA---G 337740 Query 724968 TCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCC 725027 | ||| || |||||| || ||||||| || |||| ||| ||| |||||| Sbjct 337741 GCTATGAGCATTATGAACAGCTTCATCAACGATATTTTCGAGAAGGTCGCCACGGAGGCC 337800 Query 725028 GGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACC 725084 |||||| |||| ||||||| || | | || ||| ||||| || ||||| Sbjct 337801 TCCCGCCTGAGCCGCTACAACAAG---AAGCCCACCGTCACTTCTCGCGAAATTCAGACG 337857 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||||| | | | ||||| ||||||| |||||| || || |||||||||| Sbjct 337858 GCCGTGCGCCTGGTGCTTCCTGGCGAGCTGGCCAAGCACGCGGTGTCGGAGGGCACCA 337915 >seq6 Length=2401260 Score = 93.3 bits (102), Expect = 6e-13 Identities = 136/187 (73%), Gaps = 13/187 (7%) Strand=Plus/Minus Query 1600558 CACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTG 1600617 |||||||| || ||| ||||||| || | || ||||||||||| || || |||||||| Sbjct 2072388 CACCTTGCTCATGAGCGCCTCCACCAAATGTCCGATGGTCATGCGGGAGGGAATGGCGTG 2072329 Query 1600618 CGGGTTGATCACAATGTCGGG--CGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC- 1600674 |||||||| | ||||| || | || || ||||| || ||||||||||||| Sbjct 2072328 CGGGTTGACGATGATGTCCGGCACAATGC-CCTCCGCG----GAGAAGGGCATGTCCTCC 2072274 Query 1600675 --GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCG 1600732 |||| || | | |||| ||||||||| |||||||| || || | | |||||| Sbjct 2072273 ATGGTGTAG-GTA--ATGCCGCAGGTGCCCTTCTGGCCGTGACGGGAGGCGAACTTGTCG 2072217 Query 1600733 CCCACCT 1600739 || |||| Sbjct 2072216 CCAACCT 2072210 >seq13 Length=2129673 Score = 91.5 bits (100), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1816142 CACCGGCGCTGGATGTAGCCACGTCCGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCG 1816201 |||| ||||||||||| || ||||||||||||||||||||||| || || ||| Sbjct 1983201 CACCTTCGCTGGATGTAACCGGTGGAGGCGGTCTTGACGGCCGTGTCGATAAGACCTTCG 1983142 Query 1816202 CGGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTG 1816261 || || || || ||| ||||| | ||| ||| ||||||| || ||| |||||| Sbjct 1983141 CGACCACCCATGGCGTGGAAAAAGAACTCCTGCGGTGTGAGGCCTCGTAGGTAGGAGTTG 1983082 Query 1816262 CGCACAAAGCCGCGGCTCTCGGG 1816284 | ||| || |||||| |||||| Sbjct 1983081 CCCACGAAACCGCGGGCCTCGGG 1983059 >seq59 Length=853771 Score = 86.0 bits (94), Expect = 9e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1571190 CAGGTGCCCCTGCTGCTGGCGTGGGCCATGACCATCCACAAGTGCCAGGGCATGTCGCTG 1571249 |||||||||||| ||| || ||||| ||||||| |||||||||||||||||||||||| Sbjct 785062 CAGGTGCCCCTGAAGCTCGCCTGGGCGCTGACCATACACAAGTGCCAGGGCATGTCGCTG 785003 Query 1571250 GACCGGG 1571256 ||| ||| Sbjct 785002 GACAGGG 784996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177690538750662