Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq48 100 3e-16
seq35 93.3 4e-14
seq67 91.5 1e-13
>seq48
Length=1037572
Score = 100 bits (110), Expect = 3e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|||||||| || ||||| |||||||| || |||||||||||||| | || ||| | ||
Sbjct 716593 CAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGCCCATC 716534
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGC 35633
|| || ||||| || ||||| |||||||||||||| |||| |||| ||
Sbjct 716533 CTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATCCGGGGGAATGC 716484
>seq35
Length=1396082
Score = 93.3 bits (102), Expect = 4e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || || || |||||||| ||||||||||| || |||
Sbjct 1305472 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305413
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || ||||| |||| ||||||||||||| |||
Sbjct 1305412 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1305353
Query 35630 ACGC 35633
| ||
Sbjct 1305352 ATGC 1305349
Score = 93.3 bits (102), Expect = 4e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || || || |||||||| ||||||||||| || |||
Sbjct 1305843 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305784
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || ||||| |||| ||||||||||||| |||
Sbjct 1305783 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1305724
Query 35630 ACGC 35633
| ||
Sbjct 1305723 ATGC 1305720
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568
|||||| || | | | ||||| || || || |||||||| ||||||||||| || ||
Sbjct 1306215 TCCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1306156
Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628
|| || || | || ||||||||||| || ||||| |||| ||||||||||||| ||
Sbjct 1306155 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1306096
Query 35629 AACGC 35633
|| ||
Sbjct 1306095 AATGC 1306091
Score = 89.7 bits (98), Expect = 5e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || || || |||||||| ||||||||||| || |||| || || | || ||
Sbjct 1305103 CACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCCATCCTC 1305044
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGC 35633
||||||||| || ||||| |||| ||||||||||||| |||| ||
Sbjct 1305043 CAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGC 1304997
>seq67
Length=753185
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||||| ||| | ||| || ||||| || |||||||| || |||| ||| || | ||
Sbjct 68666 CAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATC 68725
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGC 35633
||||||||||| || || || |||| ||||||||||||| ||||| ||
Sbjct 68726 CTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGC 68775
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||||| ||| | ||| |||||||| || |||||||| || |||| ||| || | ||
Sbjct 68293 CAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATC 68352
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGC 35633
||||||||||| || || || |||| ||||||||||| | |||| ||
Sbjct 68353 CTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGC 68402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450786550715080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |