Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq10 203 4e-47 >seq10 Length=2191866 Score = 203 bits (224), Expect = 4e-47 Identities = 209/271 (77%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 || || |||||| | ||||| || | |||||||| || ||||||||||||| ||| | Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| ||| ||| | | ||||| ||| || || ||| |||| ||| |||||||||| Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTTATCATCGCTTTCATCGCTGCTCC 2092254 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || |||||||| || || |||||||| || | ||||| || | ||||| ||||| Sbjct 2092253 GCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAA 2092194 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||||||| | ||||| ||||||||| |||| ||||| || || || || ||||| || || Sbjct 2092193 CATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAAT 2092134 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTG 178118 |||||||| || || || ||||||||| || Sbjct 2092133 TTGGGAAGCTGCTTCTCTAGATGAGTGGTTG 2092103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606000123524880