Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq35 113 6e-20
seq94 86.0 8e-12
>seq35
Length=1396082
Score = 113 bits (124), Expect = 6e-20
Identities = 116/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| || |||||||| |||||||||||||| || |||||| || || ||||| || ||
Sbjct 1268972 GTGCAGCCCCTCGTCTCGGGAGATGAGTTCGTTTGAGAAGGTTAGGCCGGGCATCAGGCC 1268913
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|| ||||| | ||||||||| ||||| ||||| ||| ||||| |||||||||
Sbjct 1268912 GCGTTTCTTGAGCCAGAAAATGCTGCAAAACGAGCCGCTGAAAAAGATACCCTCCACAGC 1268853
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 130178
|||||| || | || ||||| | |||||||
Sbjct 1268852 CGCGAAGGCTACCAGCCGCTCCGGGAAGGAGC 1268821
Score = 93.3 bits (102), Expect = 5e-14
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACC 118162
||||||||| || | || || || | | | |||| || |||||| |||||| ||
Sbjct 1358501 CCAGAGACCCATTCTGTTCAGGTCGTGAAGCAAGTGCTGGTTCACAACAGTAAACTCGCC 1358560
Query 118163 CGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 118222
|| | ||| | | || || || | ||||| |||||||||||||| ||||| ||
Sbjct 1358561 CGATAACACGCGCCGAACGTAAATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 1358620
Query 118223 CAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278
|| ||| |||| || ||||||||||||||||| || | | |||||||| ||||
Sbjct 1358621 CAGGATCTGGGACGTCGAGGCTGTGGGCATGGGGGCAACCAAGAGGCTGTTCCGGA 1358676
>seq94
Length=360037
Score = 86.0 bits (94), Expect = 8e-12
Identities = 142/203 (70%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 57486 GTGGAACATCAT--CGCTGAACCACCCAACATCATGATGAGCTTCACCTCGGGGGCAACG 57543
||||||||| || ||||| || |||| | ||||| ||||||| ||||||||||||
Sbjct 36477 GTGGAACATGATGGCGCTG--CCGCCCAGCGCCATGAGCAGCTTCAGCTCGGGGGCAACC 36534
Query 57544 TTCACCTTAGAGCGGTACTTCACGTAGAGTTCCTCAAACACACCATCGTAGTCATCCACA 57603
| |||| |||||| ||| || |||||||| | |||| ||||| | |
Sbjct 36535 CTGGCCTTGCCCTTGTACTTTTCGTGCAGCTCCTCAAAGATCTCATCATAGTCGCCGATG 36594
Query 57604 TTCTCCATGACGGACTCAGACCAACCCTCAAGTTGGATCTCAAATGGGTTGTACCTTTTG 57663
|| || ||| | ||| ||||| || || || | ||| |||||||||| | | | |
Sbjct 36595 TTGTCGGTGATGCTCTCTGACCAGCCATCCAGCTTGATGTCAAATGGGTCGAAGCGGCCG 36654
Query 57664 TTGAGGAACTCCAGACCCGTCAC 57686
||||||||||| | |||| |||
Sbjct 36655 TTGAGGAACTCGACGCCCGACAC 36677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618425529219560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |