Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8 113 5e-20 seq35 91.5 2e-13 >seq8 Length=2307048 Score = 113 bits (124), Expect = 5e-20 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || || ||||| |||||||| || ||||| | |||||| | || || || || ||| Sbjct 1093013 CGGTCGAAGCGGCCTGGACGCAGCAGCGCCTGATCAAGCACGTCGGGTCGGTTGGTGGCG 1093072 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| || ||| || | ||||| || ||||| || |||| ||| |||||| Sbjct 1093073 GCCAGCACAATAACACCCGTGTTGCCCTCAAAGCCGTCCATTTCCGTCAGAAGCTGGTTA 1093132 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 || || || || || |||||||| || | || ||| || || | || || |||| Sbjct 1093133 ATGGTCTGCTCGCGCTCATCATT-GCCGCCAC-CCATGCCGGCGCCACGCTGGCGACCCA 1093190 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 | |||||||||||||||||||||| |||||| ||| Sbjct 1093191 CAGCATCAATCTCATCAATGAAGATGATGCAGGGT 1093225 >seq35 Length=1396082 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| | ||||| || | || || ||| ||| ||||||||||| ||| || || Sbjct 1268823 TCCTTCCCGGAGCGGCTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCG 1268882 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||| |||| ||||||||||| || || || ||||| || || |||||| ||| Sbjct 1268883 TTTTGCAGCATTTTCTGGCTCAAGAAACGCGGCCTGATGCCCGGCCTAACCTTCTCAAAC 1268942 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || ||||| || |||||||| || ||| Sbjct 1268943 GAACTCATCTCCCGAGACGAGGGGCTGCAC 1268972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251679259240