Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq35 147 2e-30
>seq35
Length=1396082
Score = 147 bits (162), Expect = 2e-30
Identities = 138/173 (80%), Gaps = 2/173 (1%)
Strand=Plus/Minus
Query 19453 CAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCC 19512
|||||| || ||||||| |||||||| ||||||||| | |||||||||||| |||||||
Sbjct 1360807 CAGGTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATCGAGCC 1360748
Query 19513 ATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGAT 19572
||||| ||||||||| | || || | || |||||| ||| || || | ||||||
Sbjct 1360747 CTGGCATGCGGACGTCTTCGAGTTTTTGGATCTGCGCAAGAATCACGGCAAGGAGGAGGC 1360688
Query 19573 GCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624
|||| || || || ||| |||||||| |||||||||||||| |||||||||
Sbjct 1360687 GCGCGCGCGTGATCTGTTCTACGGCCTT-TGGATTCCGGACCTGTTCATGGAG 1360636
Score = 122 bits (134), Expect = 1e-22
Identities = 131/171 (77%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCT 79438
||||||||| |||||||| ||||| ||| |||| ||| || || || ||| |||||
Sbjct 1360636 CTCCATGAACAGGTCCGGAATCCAAAGG-CCGTAGAACAGATCACGCGCGCGCGCCTCCT 1360694
Query 79439 CGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCA 79498
| | ||| || ||| ||||| || | ||| || | || ||| || ||||| ||||| |
Sbjct 1360695 CCTTGCCGTGATTCTTGCGCAGATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGA 1360754
Query 79499 GATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACC 79549
||||||||||| | ||||||||||||||||||||||||| || ||||
Sbjct 1360755 TGTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACATACC 1360805
Score = 120 bits (132), Expect = 3e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| |||| |||||||| || || ||||||||||| |||| |||| | ||||| |
Sbjct 1357978 GTCCGCAGGTAGTACATTCCAGTTTTGAGACCCTTGCGCCATGCGTAGAAGTGCAGCGAC 1358037
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| |||||| | | | | || | | |||||||| ||||| |||||| |||||||| |||
Sbjct 1358038 GTGAGCTTGCCGAAATTAGGATCCGGCATGAAGACGTTGAACGACTGCGACTGGTCAATG 1358097
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369
|| || |||||||| || |||||||| | | || ||| ||||||||| | |||
Sbjct 1358098 TAGGCCCCGCGGTCAGCGGCCATGTCCACTAGCGTGCGCTGCTTAATCTCCCAAACCGTC 1358157
Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCA 78403
||| | ||||| ||||| | |||||||||
Sbjct 1358158 TTGTACAACGCCTTGAGCTCGACTGGGATGTCCA 1358191
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 20117 CAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGC-GCG 20175
||||| |||| ||| ||| || || || || | | |||||| ||| |||| |||
Sbjct 1359167 CAGGGTTTGGCGGACACTTTTATTATACTTGGTATGCCCTTCGACTCGCCCGAGGCTGCG 1359108
Query 20176 CGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA 20235
||||||||| |||||||||| | | ||| | || ||||| || ||||||||
Sbjct 1359107 -GAGCTCAACCGCCAGATCTTCGAGGTCATTTACTATGCTGCCCTGTCGGCCTCGTGCGA 1359049
Query 20236 ACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTAT 20295
|| || | |||||| ||||||| |||| | |||| ||||| | | | |||| ||
Sbjct 1359048 GCTAGCTGAGCGCGACGGCACGTACGAAACGTACGAGGGTTCGCCTGTGAGCCAGGGCAT 1358989
Query 20296 CCTCCAGCCGGACATGTGGGGCGT 20319
||| ||||| ||||||||||| ||
Sbjct 1358988 CCTGCAGCCCGACATGTGGGGTGT 1358965
Score = 93.3 bits (102), Expect = 5e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062
||||| || ||||| ||| |||||||| || |||||||||||||| || || |||
Sbjct 1268856 GTGGAGGGTATCTTTTTCAGCGGCTCGTTTTGCAGCATTTTCTGGCTCAAGAAACGCGGC 1268915
Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118
|| ||||| ||||| | ||||| ||||| || || ||||| |||||||| || ||
Sbjct 1268916 CTGATGCCCGGCCTAACCTTCTCAAACGAACTCATCTCCCGAGACGAGGGGCTGCA 1268971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548516222443440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |