Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq35 147 2e-30 >seq35 Length=1396082 Score = 147 bits (162), Expect = 2e-30 Identities = 138/173 (80%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 19453 CAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCC 19512 |||||| || ||||||| |||||||| ||||||||| | |||||||||||| ||||||| Sbjct 1360807 CAGGTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATCGAGCC 1360748 Query 19513 ATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGAT 19572 ||||| ||||||||| | || || | || |||||| ||| || || | |||||| Sbjct 1360747 CTGGCATGCGGACGTCTTCGAGTTTTTGGATCTGCGCAAGAATCACGGCAAGGAGGAGGC 1360688 Query 19573 GCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 |||| || || || ||| |||||||| |||||||||||||| ||||||||| Sbjct 1360687 GCGCGCGCGTGATCTGTTCTACGGCCTT-TGGATTCCGGACCTGTTCATGGAG 1360636 Score = 122 bits (134), Expect = 1e-22 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCT 79438 ||||||||| |||||||| ||||| ||| |||| ||| || || || ||| ||||| Sbjct 1360636 CTCCATGAACAGGTCCGGAATCCAAAGG-CCGTAGAACAGATCACGCGCGCGCGCCTCCT 1360694 Query 79439 CGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCA 79498 | | ||| || ||| ||||| || | ||| || | || ||| || ||||| ||||| | Sbjct 1360695 CCTTGCCGTGATTCTTGCGCAGATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGA 1360754 Query 79499 GATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACC 79549 ||||||||||| | ||||||||||||||||||||||||| || |||| Sbjct 1360755 TGTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACATACC 1360805 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| |||||||| || || ||||||||||| |||| |||| | ||||| | Sbjct 1357978 GTCCGCAGGTAGTACATTCCAGTTTTGAGACCCTTGCGCCATGCGTAGAAGTGCAGCGAC 1358037 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | |||||| | | | | || | | |||||||| ||||| |||||| |||||||| ||| Sbjct 1358038 GTGAGCTTGCCGAAATTAGGATCCGGCATGAAGACGTTGAACGACTGCGACTGGTCAATG 1358097 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || || |||||||| || |||||||| | | || ||| ||||||||| | ||| Sbjct 1358098 TAGGCCCCGCGGTCAGCGGCCATGTCCACTAGCGTGCGCTGCTTAATCTCCCAAACCGTC 1358157 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCA 78403 ||| | ||||| ||||| | ||||||||| Sbjct 1358158 TTGTACAACGCCTTGAGCTCGACTGGGATGTCCA 1358191 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20117 CAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGC-GCG 20175 ||||| |||| ||| ||| || || || || | | |||||| ||| |||| ||| Sbjct 1359167 CAGGGTTTGGCGGACACTTTTATTATACTTGGTATGCCCTTCGACTCGCCCGAGGCTGCG 1359108 Query 20176 CGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA 20235 ||||||||| |||||||||| | | ||| | || ||||| || |||||||| Sbjct 1359107 -GAGCTCAACCGCCAGATCTTCGAGGTCATTTACTATGCTGCCCTGTCGGCCTCGTGCGA 1359049 Query 20236 ACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTAT 20295 || || | |||||| ||||||| |||| | |||| ||||| | | | |||| || Sbjct 1359048 GCTAGCTGAGCGCGACGGCACGTACGAAACGTACGAGGGTTCGCCTGTGAGCCAGGGCAT 1358989 Query 20296 CCTCCAGCCGGACATGTGGGGCGT 20319 ||| ||||| ||||||||||| || Sbjct 1358988 CCTGCAGCCCGACATGTGGGGTGT 1358965 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || ||||| ||| |||||||| || |||||||||||||| || || ||| Sbjct 1268856 GTGGAGGGTATCTTTTTCAGCGGCTCGTTTTGCAGCATTTTCTGGCTCAAGAAACGCGGC 1268915 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 || ||||| ||||| | ||||| ||||| || || ||||| |||||||| || || Sbjct 1268916 CTGATGCCCGGCCTAACCTTCTCAAACGAACTCATCTCCCGAGACGAGGGGCTGCA 1268971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516222443440