Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq37 120 3e-22 seq35 120 3e-22 >seq37 Length=1295102 Score = 120 bits (132), Expect = 3e-22 Identities = 150/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 ||||| || ||||||| |||| ||| ||||||||||| ||||| || || || ||| Sbjct 760105 AGGCGCGTATAAATGTAGCGAGCGCTGGCAGCATCCTTTCCACCCTGCAGGCGTGTGCCG 760046 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || || || || || | || |||||| | |||||| || ||||||| ||| || | | Sbjct 760045 AACTGACCGCTGGGGTGCAGGAGGTTGATGTTGTTACTTCCAACAAAGTCTTGTGCGAGG 759986 Query 117419 TTGACAATCGTACCTTGG--AGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 || ||||| |||| ||| | |||| || |||||||| ||||| | ||||| || | Sbjct 759985 TTTACAATGGTAC--TGGCCAAGCTCTGTTCGCCATGGTGGTACGCGGAGTGCTCGGCTA 759928 Query 117477 CGTAGCCCGCCAGCTGAGCCACCT 117500 |||| | | ||| |||||||||| Sbjct 759927 CGTACGCGGACAGTTGAGCCACCT 759904 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 117994 GTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCAT 118053 ||| || | ||||| | ||||||||||||||| |||||||| ||||| ||| ||||| Sbjct 758687 GTGCATGAAGTTCATGATGAGCCCCTTGATATGCGAACCGTCGTGATCCTGATCCGTCAT 758628 Query 118054 GATCATCAGGCGGCCGTACCGTAAA 118078 |||||| ||| |||| ||||| ||| Sbjct 758627 GATCATAAGGTGGCCATACCGCAAA 758603 >seq35 Length=1396082 Score = 120 bits (132), Expect = 3e-22 Identities = 129/168 (77%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 |||| || ||||||| || || ||||||||||| | |||||||||||| ||||||| | Sbjct 1360805 GGTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATCGAGCCCT 1360746 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 |||| || ||| | | |||||| | || ||||| |||||| || | || ||| || Sbjct 1360745 GGCATGCGGACGTCTTCGAGTTTTTGGATCTGCGCAAGAATCACGGCAAGGAGGAGGCGC 1360686 Query 53652 GCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 || ||||| ||||| ||| || || |||||||||||||| |||||| Sbjct 1360685 GCGCGCGTGATCTGTTCTACGGC-CTTTGGATTCCGGACCTGTTCATG 1360639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207442909800