Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq67 113 5e-20 seq48 104 3e-17 seq35 102 9e-17 seq37 89.7 6e-13 >seq67 Length=753185 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| |||||||||||||| ||||| || || ||||| || ||||||| ||| Sbjct 68776 GGCATTCCTCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68717 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| |||||| ||| || ||||| || ||||||| ||| Sbjct 68716 ACCCTGGCTGACTACAACATCCAGAAGGAAAGCACGCTCCATCTGGTGCTGCGTCTGCGC 68657 Query 27628 GGTGG 27632 || || Sbjct 68656 GGCGG 68652 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| ||||| || || ||||| || ||||||| ||| Sbjct 68403 GGCATTCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68344 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||| || ||||| || ||||||| ||| Sbjct 68343 ACCCTGGCTGACTACAACATCCAGAAGGAGAGCACGCTCCATCTGGTGCTGCGTCTGCGC 68284 Query 27628 GGTGG 27632 || || Sbjct 68283 GGCGG 68279 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || || ||||||||||| Sbjct 68650 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTGGAGGTTGAGTCGTCG 68591 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||||| || ||||||| || || |||||||||||||| Sbjct 68590 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 68547 >seq48 Length=1037572 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || |||||||| ||||||||||||||||||||| | Sbjct 715928 ATGCAGATTTTTGTTAAAACGTTGACGGGCAAGACGATTACTCTTGAGGTTGAGTCATCT 715987 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 || | || | |||| ||||||| ||||| |||||||| ||||| || Sbjct 715988 GACACGATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGTAT 716034 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| ||||||||||| | || || ||||| |||||||| ||||||| ||| Sbjct 716174 GGCATTCCTCCCGACCAGCAGCGGTTGATCTTCGCTGGCAAGCAACTAGAGGATGGGCGT 716233 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||||||| ||| |||| ||||| ||| || || || || ||||||| ||| Sbjct 716234 ACGCTGGCAGACTACAATATCCAGAAGGAGAGCACACTGCACCTGGTACTGCGTCTGCGC 716293 Query 27628 GGTGG 27632 || || Sbjct 716294 GGCGG 716298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || ||||||||||| || || || ||||| ||||| | Sbjct 716300 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACGCTGGAGGTGGAGTCGTCT 716359 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| || ||||||| |||||||||||||| ||||| Sbjct 716360 GACACGATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGG 716403 >seq35 Length=1396082 Score = 102 bits (112), Expect = 9e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 1304440 ATGCAGATCTTTGTCAAGACCCTTACGGGGAAGACTATTACCCTTGAGGTCGAGTCCTCG 1304499 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| |||| ||| | || || || ||||||||||||||||| Sbjct 1304500 GATACTATTGAGAATGTAAAAGCCAAGATTCAGGACAAGGAGGG 1304543 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/167 (73%), Gaps = 8/167 (5%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| | || || ||||||| ||| ||| |||| || || |||||||| | |||||| | Sbjct 1360169 ACTCAATAATCTCGGTGCACAGATTGGAACACTTGATAGTGCCCAGGTTCTGCTGGTTGG 1360228 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 | || |||||| | ||||||||| |||||||||| | || ||||| ||||| | || Sbjct 1360229 ATTTCTTGTTGCACGAGTCCTTGTACAACATGTACGGATTGCCCGTCTCCACCTGAGCCT 1360288 Query 81068 TGAGGATGGCGTCCCAAATCT----CGCGCGCCTTGACCACCTTGCG 81110 |||||||| ||| | | ||||||| ||||||||||| Sbjct 1360289 CCAGGATGGCAAACCACAGTTGCTGCGCGCGC----ACCACCTTGCG 1360331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| ||||||||||| ||||| || ||||||| || Sbjct 1306090 GGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 1306149 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || | || ||||| ||| | || || || | ||||| ||| Sbjct 1306150 ACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCGC 1306209 Query 27628 GGTGGAC 27634 ||||||| Sbjct 1306210 GGTGGAC 1306216 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| ||||||||||| ||||| || ||||||| || Sbjct 1304996 GGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 1305055 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || | || ||||| ||| | || || || | ||||| ||| Sbjct 1305056 ACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCGC 1305115 Query 27628 GGTGG 27632 ||||| Sbjct 1305116 GGTGG 1305120 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| ||||||||||| ||||| || ||||||| || Sbjct 1305348 GGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 1305407 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || | || ||||| ||| | || || || | ||||| || Sbjct 1305408 ACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCGT 1305467 Query 27628 GGTGG 27632 ||||| Sbjct 1305468 GGTGG 1305472 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| ||||||||||| ||||| || ||||||| || Sbjct 1305719 GGCATTCCGCCGGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 1305778 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || | || ||||| ||| | || || || | ||||| || Sbjct 1305779 ACTCTGGCGGACTACAACATTCAGAAGGAGAGCACCTTGCACCTGGTGCTCCGTCTGCGT 1305838 Query 27628 GGTGG 27632 ||||| Sbjct 1305839 GGTGG 1305843 >seq37 Length=1295102 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || |||||||| || || ||||| ||||| Sbjct 457877 ATGCAAATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCG 457936 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| ||||||| || ||||||||||||||||| Sbjct 457937 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 457980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301481771120