Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq10 183 4e-41 >seq10 Length=2191866 Score = 183 bits (202), Expect = 4e-41 Identities = 191/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| ||||| |||| || | ||| | ||||| | |||||||| ||||| || Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATTGCAGCACCA 176232 ||||| |||||||| || ||||| || || |||||| | || || || || || || Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTTATCATCGCTTTCATCGCTGCTCCG 2092253 Query 176233 CCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAAC 176292 || || || ||||| |||||||| |||||||| |||| ||||| || ||||| |||||| Sbjct 2092252 CCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAAC 2092193 Query 176293 ATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATC 176352 |||||| |||| || || || |||| || ||||| ||||| || || ||||||||||| Sbjct 2092192 ATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAATT 2092133 Query 176353 TGGGAAGCAGC 176363 |||||||| || Sbjct 2092132 TGGGAAGCTGC 2092122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603484962856320