Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq10 176 6e-39 seq1 105 8e-18 >seq10 Length=2191866 Score = 176 bits (194), Expect = 6e-39 Identities = 205/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 189655 ATGGCCTCAGTTCTGTGAGTGGGTAACATCAACAAACAATAGAATCTATGTTGGTTGGTT 189714 |||| ||| || ||||||||| | || ||||| | || | | || | |||||||| Sbjct 2092382 ATGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTT 2092323 Query 189715 TGGTGTACTCATGATTCCATGCTTGCTCGCAGCAGCAGCATGCTTCGTTGTTGCATTTAT 189774 |||||| ||||||| ||||| | || | ||| || || || | | || || || Sbjct 2092322 CGGTGTAATCATGATCCCATGTCTTCTTACTGCAACATCAGTATTTATCATCGCTTTCAT 2092263 Query 189775 TGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTTCACTTCTCTA 189834 || || || || |||||||| ||||| || | || |||||| ||||||| ||||| || Sbjct 2092262 CGCTGCTCCGCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTA 2092203 Query 189835 TGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCTATTGGTCTACACTT 189894 ||||||||||||||| | ||||||||||| || | || || ||||| || || || || Sbjct 2092202 TGGTAACAACATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTT 2092143 Query 189895 CTACCCAATCTGGGAAGCAGCAACAGTAGATGAGTGG 189931 ||||||||| |||||||| || | ||||||||||| Sbjct 2092142 CTACCCAATTTGGGAAGCTGCTTCTCTAGATGAGTGG 2092106 >seq1 Length=5981844 Score = 105 bits (116), Expect = 8e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 184988 TTTCCAAAATTTAATCAAGATTTGGCAAGTGATCCTACAACTAGGAGATTGTGGTATGGA 185047 || |||||||||| |||| | | ||| || |||||||| | ||| | ||||| || Sbjct 5794312 TTCCCAAAATTTAGCCAAGGTCTAGCACAAGACCCTACAACACGTAGAATATGGTACGGG 5794253 Query 185048 TTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAGTTATATCAA 185107 | |||| || ||||| ||||| || ||||| |||||||||||| || | |||||| Sbjct 5794252 CTTGCAATGGCTCATGATTTTGAAAGCCATGATGGTATGACAGAAGAAAATCTTTATCAA 5794193 Query 185108 AAATTATTTGCTACACACTTTGGTCA 185133 || |||||||| ||||||||||||| Sbjct 5794192 AAGATATTTGCTTCACACTTTGGTCA 5794167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631417326057160